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Il17re interleukin 17 receptor E [ Mus musculus (house mouse) ]

Gene ID: 57890, updated on 21-Apr-2024

Summary

Official Symbol
Il17reprovided by MGI
Official Full Name
interleukin 17 receptor Eprovided by MGI
Primary source
MGI:MGI:1889371
See related
Ensembl:ENSMUSG00000043088 AllianceGenome:MGI:1889371
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Il25r; IL-17RE
Summary
Predicted to enable interleukin-17 receptor activity. Predicted to act upstream of or within inflammatory response. Predicted to be located in cytoplasm; extracellular region; and plasma membrane. Predicted to be integral component of membrane. Is expressed in urinary system. Orthologous to human IL17RE (interleukin 17 receptor E). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach adult (RPKM 20.6), bladder adult (RPKM 19.2) and 14 other tissues See more
Orthologs
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Genomic context

Location:
6 E3; 6 52.76 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113435659..113447719)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113458699..113470758)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene cell death-inducing DFFA-like effector c Neighboring gene predicted gene, 52871 Neighboring gene STARR-positive B cell enhancer ABC_E8122 Neighboring gene jagunal homolog 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:113408068-113408221 Neighboring gene predicted gene, 52872 Neighboring gene interleukin 17 receptor C Neighboring gene STARR-positive B cell enhancer ABC_E684 Neighboring gene STARR-seq mESC enhancer starr_17041 Neighboring gene cysteine-rich with EGF-like domains 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (5)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables interleukin-17 receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within inflammatory response IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
interleukin-17 receptor E
Names
IL-17 receptor E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034029.2NP_001029201.1  interleukin-17 receptor E isoform 2

    See identical proteins and their annotated locations for NP_001029201.1

    Status: VALIDATED

    Source sequence(s)
    AC153910, AK044815, DQ092340
    Consensus CDS
    CCDS20421.1
    UniProtKB/Swiss-Prot
    Q8BH06
    Related
    ENSMUSP00000054378.5, ENSMUST00000053569.7
    Conserved Domains (2) summary
    pfam08357
    Location:247374
    SEFIR; SEFIR domain
    pfam15037
    Location:1207
    IL17_R_N; Interleukin-17 receptor extracellular region
  2. NM_001034031.2NP_001029203.1  interleukin-17 receptor E isoform 2

    See identical proteins and their annotated locations for NP_001029203.1

    Status: VALIDATED

    Source sequence(s)
    AC153910, AK044815, DQ092341
    Consensus CDS
    CCDS20421.1
    UniProtKB/Swiss-Prot
    Q8BH06
    Related
    ENSMUSP00000098626.2, ENSMUST00000101065.8
    Conserved Domains (2) summary
    pfam08357
    Location:247374
    SEFIR; SEFIR domain
    pfam15037
    Location:1207
    IL17_R_N; Interleukin-17 receptor extracellular region
  3. NM_001362204.1NP_001349133.1  interleukin-17 receptor E isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC153910, AK044815, BC069861
    Consensus CDS
    CCDS90102.1
    Related
    ENSMUSP00000145345.2, ENSMUST00000203661.3
    Conserved Domains (2) summary
    pfam15037
    Location:56408
    IL17_R_N; Interleukin-17 receptor extracellular region
    cl23749
    Location:406529
    TIR_2; TIR domain
  4. NM_001362205.1NP_001349134.1  interleukin-17 receptor E isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AC153910, AF458068, AK044815
    Consensus CDS
    CCDS90101.1
    Related
    ENSMUSP00000145384.2, ENSMUST00000204774.3
    Conserved Domains (2) summary
    pfam08357
    Location:428555
    SEFIR; SEFIR domain
    pfam15037
    Location:56408
    IL17_R_N; Interleukin-17 receptor extracellular region
  5. NM_145826.6NP_665825.2  interleukin-17 receptor E isoform 1 precursor

    See identical proteins and their annotated locations for NP_665825.2

    Status: VALIDATED

    Source sequence(s)
    AC153910
    Consensus CDS
    CCDS20420.1
    UniProtKB/Swiss-Prot
    Q3I5F0, Q6NSU9, Q8BH06, Q8C5D0, Q8K4C1, Q8R335
    Related
    ENSMUSP00000062103.8, ENSMUST00000058548.14
    Conserved Domains (2) summary
    pfam08357
    Location:448575
    SEFIR; SEFIR domain
    pfam15037
    Location:27408
    IL17_R_N; Interleukin-17 receptor extracellular region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    113435659..113447719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255519.2XP_030111379.1  interleukin-17 receptor E isoform X1

    Conserved Domains (2) summary
    pfam08357
    Location:247374
    SEFIR; SEFIR domain
    pfam15037
    Location:1207
    IL17_R_N; Interleukin-17 receptor extracellular region
  2. XM_036152248.1XP_036008141.1  interleukin-17 receptor E isoform X1

    Conserved Domains (2) summary
    pfam08357
    Location:247374
    SEFIR; SEFIR domain
    pfam15037
    Location:1207
    IL17_R_N; Interleukin-17 receptor extracellular region