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PTMAP4 prothymosin alpha pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 5761, updated on 10-Oct-2023

Summary

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Official Symbol
PTMAP4provided by HGNC
Official Full Name
prothymosin alpha pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:9627
See related
AllianceGenome:HGNC:9627
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PTMA
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Genomic context

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Location:
12p13.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (9239326..9240496, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (9221842..9223012, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (9391922..9393092, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene killer cell lectin like receptor G1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9322697-9323208 Neighboring gene TPT1 pseudogene 12 Neighboring gene PZP alpha-2-macroglobulin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:9393003-9394202 Neighboring gene pregnancy zone protein-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4223 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4224 Neighboring gene microRNA 1244-3 Neighboring gene long intergenic non-protein coding RNA 987 Neighboring gene alpha-2-macroglobulin pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:9435851-9436699 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:9442077-9442928 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [New intronless members of human prothymosin alpha genes]. Rubtsov IuP, et al. Mol Biol (Mosk), 1995 Nov-Dec. PMID 8592501
  2. Isolation and partial sequencing of the human prothymosin alpha gene family. Evidence against export of the gene products. Eschenfeldt WH, et al. J Biol Chem, 1989 May 5. PMID 2708378
  3. The human prothymosin alpha gene family contains several processed pseudogenes lacking deleterious lesions. Manrow RE, et al. Genomics, 1992 Jun. PMID 1612591

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • prothymosin, alpha pseudogene 4 (gene sequence 112)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001181.3 

    Range
    101..1271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    9239326..9240496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    9221842..9223012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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