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Akip1 A kinase interacting protein 1 [ Mus musculus (house mouse) ]

Gene ID: 57373, updated on 8-May-2024

Summary

Official Symbol
Akip1provided by MGI
Official Full Name
A kinase interacting protein 1provided by MGI
Primary source
MGI:MGI:3041226
See related
Ensembl:ENSMUSG00000031023 AllianceGenome:MGI:3041226
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BCA3; ORF27; C11orf17; D7H11orf17; D930014E17Rik; ICRFP703B1614Q5.6
Summary
Acts upstream of or within substrate adhesion-dependent cell spreading. Predicted to be located in nucleus and perinuclear region of cytoplasm. Predicted to be active in nucleoplasm. Is expressed in genitourinary system; hippocampus; submandibular gland; and trachea. Orthologous to human AKIP1 (A-kinase interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 8.7), liver E14 (RPKM 7.9) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 E3; 7 57.44 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109302885..109311393)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109703678..109712186)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24888 Neighboring gene ribosomal protein L27A Neighboring gene DENN domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_19802 Neighboring gene STARR-seq mESC enhancer starr_19804 Neighboring gene STARR-positive B cell enhancer ABC_E4965 Neighboring gene VISTA enhancer mm1407 Neighboring gene cDNA sequence BC051019 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (2)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
A-kinase-interacting protein 1
Names
A kinase (PRKA) interacting protein 1
PKA-interacting protein
breast cancer-associated gene 3 protein
proline-rich protein BCA3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020616.2NP_065641.1  A-kinase-interacting protein 1

    See identical proteins and their annotated locations for NP_065641.1

    Status: VALIDATED

    Source sequence(s)
    AC132584, AK163012
    Consensus CDS
    CCDS21736.1
    UniProtKB/Swiss-Prot
    Q3TR76, Q9JJR5
    UniProtKB/TrEMBL
    Q3TW00
    Related
    ENSMUSP00000033335.6, ENSMUST00000033335.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    109302885..109311393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508055.3XP_006508118.1  A-kinase-interacting protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006508118.1

  2. XM_011241869.3XP_011240171.1  A-kinase-interacting protein 1 isoform X3

  3. XM_011241870.3XP_011240172.1  A-kinase-interacting protein 1 isoform X4

    UniProtKB/TrEMBL
    Q3TW00
  4. XM_030242826.2XP_030098686.1  A-kinase-interacting protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q3TR76, Q9JJR5
    UniProtKB/TrEMBL
    Q3TW00
  5. XM_006508057.4XP_006508120.1  A-kinase-interacting protein 1 isoform X5

  6. XM_036153280.1XP_036009173.1  A-kinase-interacting protein 1 isoform X6