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Ltb4r2 leukotriene B4 receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 57260, updated on 11-Apr-2024

Summary

Official Symbol
Ltb4r2provided by MGI
Official Full Name
leukotriene B4 receptor 2provided by MGI
Primary source
MGI:MGI:1888501
See related
Ensembl:ENSMUSG00000040432 AllianceGenome:MGI:1888501
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BLT2; LTB4-R2; LTB4-R 2; LTB4-R-2; 5830462O07Rik
Summary
Enables leukotriene B4 receptor activity. Acts upstream of or within keratinocyte migration and signal transduction. Located in membrane. Orthologous to human LTB4R2 (leukotriene B4 receptor 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 18.1), small intestine adult (RPKM 13.4) and 6 other tissues See more
Orthologs
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Genomic context

See Ltb4r2 in Genome Data Viewer
Location:
14 C3; 14 28.19 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (55995379..56001523)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55757922..55764066)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase 1 Neighboring gene NOP9 nucleolar protein Neighboring gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector B Neighboring gene STARR-seq mESC enhancer starr_36778 Neighboring gene leukotriene B4 receptor 1 Neighboring gene adenylate cyclase 4 Neighboring gene predicted gene, 32092

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC123942, MGC123943

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled peptide receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables leukotriene B4 receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables leukotriene B4 receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables leukotriene receptor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
leukotriene B4 receptor 2
Names
leukotriene B4 receptor BLT2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020490.3NP_065236.1  leukotriene B4 receptor 2

    See identical proteins and their annotated locations for NP_065236.1

    Status: VALIDATED

    Source sequence(s)
    AC098877
    Consensus CDS
    CCDS27128.1
    UniProtKB/Swiss-Prot
    Q3KP98, Q9JJL9
    Related
    ENSMUSP00000048358.5, ENSMUST00000044554.5
    Conserved Domains (2) summary
    cd14964
    Location:2347
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:21300
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    55995379..56001523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006519323.3XP_006519386.1  leukotriene B4 receptor 2 isoform X1

    See identical proteins and their annotated locations for XP_006519386.1

    Conserved Domains (2) summary
    cd14964
    Location:3460
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:33312
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  2. XM_006519326.3XP_006519389.1  leukotriene B4 receptor 2 isoform X2

    See identical proteins and their annotated locations for XP_006519389.1

    UniProtKB/Swiss-Prot
    Q3KP98, Q9JJL9
    Conserved Domains (2) summary
    cd14964
    Location:2347
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:21300
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  3. XM_036158769.1XP_036014662.1  leukotriene B4 receptor 2 isoform X1

    Conserved Domains (2) summary
    cd14964
    Location:3460
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:33312
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily