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TEX13A testis expressed 13A [ Homo sapiens (human) ]

Gene ID: 56157, updated on 5-Mar-2024

Summary

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Official Symbol
TEX13Aprovided by HGNC
Official Full Name
testis expressed 13Aprovided by HGNC
Primary source
HGNC:HGNC:11735
See related
Ensembl:ENSG00000268629 MIM:300312; AllianceGenome:HGNC:11735
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene is similar to a mouse gene that is expressed in the testis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
Expression
Restricted expression toward testis (RPKM 3.2) See more
Orthologs
mouse all
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Genomic context

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Location:
Xq22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (105218929..105220694, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (103650189..103651954, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (104463611..104465378, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor accessory protein like 2 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:103921885-103922468 Neighboring gene NANOG hESC enhancer GRCh37_chrX:103934072-103934573 Neighboring gene PHB1 pseudogene 10 Neighboring gene ribosomal protein L18a pseudogene 14 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:104543919-104544655 Neighboring gene NANOG hESC enhancer GRCh37_chrX:104669910-104670411 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 2 Neighboring gene uncharacterized LOC107985680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Molecular and cytogenetic characterization of two azoospermic patients with X-autosome translocation. Lee S, et al. J Assist Reprod Genet, 2003 Sep. PMID 14531651, Free PMC Article
  2. An abundance of X-linked genes expressed in spermatogonia. Wang PJ, et al. Nat Genet, 2001 Apr. PMID 11279525
  3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  5. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Tex13a was identified as a spermatagonia-specific gene in mouse.
    Title: An abundance of X-linked genes expressed in spermatogonia.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC131984

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
testis-expressed protein 13A
Names
testis-expressed sequence 13A protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016253.1 RefSeqGene

    Range
    4981..6746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001291277.2 → NP_001278206.1  testis-expressed protein 13A

    See identical proteins and their annotated locations for NP_001278206.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    Z74477
    Consensus CDS
    CCDS76005.1
    UniProtKB/Swiss-Prot
    B1B1G8, Q32NB6, Q9BXU3
    Related
    ENSP00000477478.2, ENST00000609007.3
    Conserved Domains (3) summary
    sd00025
    Location:380 → 399
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:376 → 400
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam15186
    Location:5 → 144
    TEX13; Testis-expressed sequence 13 protein family

  2. NM_031274.5 → NP_112564.1  testis-expressed protein 13A

    See identical proteins and their annotated locations for NP_112564.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    Z74477
    Consensus CDS
    CCDS76005.1
    UniProtKB/Swiss-Prot
    B1B1G8, Q32NB6, Q9BXU3
    Related
    ENSP00000471604.2, ENST00000600991.6
    Conserved Domains (3) summary
    sd00025
    Location:380 → 399
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:376 → 400
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam15186
    Location:5 → 144
    TEX13; Testis-expressed sequence 13 protein family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    105218929..105220694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    103650189..103651954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9BXU3.1 GenPept UniProtKB/Swiss-Prot:Q9BXU3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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