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Plac1 placental specific protein 1 [ Mus musculus (house mouse) ]

Gene ID: 56096, updated on 5-Mar-2024

Summary

Official Symbol
Plac1provided by MGI
Official Full Name
placental specific protein 1provided by MGI
Primary source
MGI:MGI:1926287
See related
Ensembl:ENSMUSG00000061082 AllianceGenome:MGI:1926287
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Epcs26; Oosp2l; DXWsu72e
Summary
Acts upstream of or within spongiotrophoblast layer developmental growth. Predicted to be located in extracellular region. Is expressed in several structures, including body wall mesenchyme; brain; extraembryonic component; genitourinary system; and lung. Orthologous to human PLAC1 (placenta enriched 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward placenta adult (RPKM 67.5) See more
Orthologs
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Genomic context

See Plac1 in Genome Data Viewer
Location:
X A5; X 29.31 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52158870..52328969, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53069993..53240110, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized LOC119919412 Neighboring gene STARR-seq mESC enhancer starr_47192 Neighboring gene Mir503, Mir351, and Mir322 host gene Neighboring gene microRNA 503 Neighboring gene microRNA 322 Neighboring gene predicted gene, 35988 Neighboring gene PABIR family member 2 Neighboring gene PABIR family member 3 Neighboring gene ribosomal protein L13 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
placenta-specific protein 1
Names
ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357802.2NP_001344731.1  placenta-specific protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    BX649621, BX679673, BX682227
    Consensus CDS
    CCDS30128.1
    UniProtKB/Swiss-Prot
    Q3UKT4, Q80WW3, Q9JI83
    Related
    ENSMUSP00000074404.3, ENSMUST00000074861.9
    Conserved Domains (1) summary
    pfam00100
    Location:30121
    Zona_pellucida; Zona pellucida-like domain
  2. NM_001426319.1NP_001413248.1  placenta-specific protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    BX649621, BX679673, BX682227
    UniProtKB/Swiss-Prot
    Q3UKT4, Q80WW3, Q9JI83
  3. NM_019538.5NP_062411.1  placenta-specific protein 1 precursor

    See identical proteins and their annotated locations for NP_062411.1

    Status: VALIDATED

    Source sequence(s)
    AK005501, BC051666
    Consensus CDS
    CCDS30128.1
    UniProtKB/Swiss-Prot
    Q3UKT4, Q80WW3, Q9JI83
    Related
    ENSMUSP00000110492.3, ENSMUST00000114843.9
    Conserved Domains (1) summary
    pfam00100
    Location:30121
    Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52158870..52328969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011251016.3XP_011249318.1  placenta-specific protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011249318.1

    UniProtKB/Swiss-Prot
    Q3UKT4, Q80WW3, Q9JI83
    Conserved Domains (1) summary
    pfam00100
    Location:30121
    Zona_pellucida; Zona pellucida-like domain