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FAM88D family with sequence similarity 88 member D [ Homo sapiens (human) ]

Gene ID: 554249, updated on 10-Oct-2023

Summary

Official Symbol
FAM88Dprovided by HGNC
Official Full Name
family with sequence similarity 88 member Dprovided by HGNC
Primary source
HGNC:HGNC:56160
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 4.8), kidney (RPKM 3.8) and 25 other tissues See more
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Genomic context

Location:
9p12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (39873857..39875395)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (39887990..39889528)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (42018875..42020413)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41926459-41927010 Neighboring gene CNTNAP3 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:41936783-41937617 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41942506-41943030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:41943031-41943555 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28421 Neighboring gene glioblastoma down-regulated RNA Neighboring gene fibroblast growth factor 7 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:41997761-41998747 Neighboring gene uncharacterized LOC124900278 Neighboring gene RNA, 7SL, cytoplasmic 763, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126049.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR769767

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    39873857..39875395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    39887990..39889528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)