U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ANKRD30BL ankyrin repeat domain 30B like [ Homo sapiens (human) ]

Gene ID: 554226, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
ANKRD30BLprovided by HGNC
Official Full Name
ankyrin repeat domain 30B likeprovided by HGNC
Primary source
HGNC:HGNC:35167
See related
Ensembl:ENSG00000163046 AllianceGenome:HGNC:35167
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD30BP3; NCRNA00164
Expression
Restricted expression toward testis (RPKM 7.1) See more
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ANKRD30BL in Genome Data Viewer
Location:
2q21.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (132147591..132258033, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (132583202..132693619, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (132905164..133015606, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene zinc finger domain containing pseudogene Neighboring gene vomeronasal 1 receptor 19 pseudogene Neighboring gene RNA, U6 small nuclear 1132, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:132919818-132920318 Neighboring gene NANOG hESC enhancer GRCh37_chr2:132971497-132971998 Neighboring gene OCT4 hESC enhancer GRCh37_chr2:132980674-132981222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:132984155-132984765 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:132998825-132999732 Neighboring gene uncharacterized LOC107985804 Neighboring gene RNA, 18S ribosomal pseudogene Neighboring gene Sharpr-MPRA regulatory region 3869 Neighboring gene RNA, 5.8S ribosomal pseudogene 5 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:133025240-133025752 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:133025753-133026264 Neighboring gene uncharacterized LOC105373622 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr2:133027787-133028728 Neighboring gene microRNA 663b Neighboring gene cell division cycle 27 pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Parmigiani RB, et al. Proc Natl Acad Sci U S A, 2006 Nov 28. PMID 17114284, Free PMC Article
  2. A transcript finishing initiative for closing gaps in the human transcriptome. Sogayar MC, et al. Genome Res, 2004 Jul. PMID 15197164, Free PMC Article
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
putative ankyrin repeat domain-containing protein 30B-like
Names
ankyrin repeat domain 30B pseudogene 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358416.1 → NP_001345345.1  putative ankyrin repeat domain-containing protein 30B-like

    Status: VALIDATED

    Source sequence(s)
    AC098826
    Consensus CDS
    CCDS86883.1
    UniProtKB/Swiss-Prot
    A7E2S9, B8ZZL7
    Related
    ENSP00000386398.1, ENST00000409867.6
    Conserved Domains (2) summary
    cd00204
    Location:66 → 191
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:104 → 135
    ANK; ANK repeat [structural motif]

RNA

  1. NR_027019.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098826

  2. NR_027020.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097532, AC098826, BC045801
    Related
    ENST00000470729.5

  3. NR_152415.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097532, AC098826

  4. NR_163999.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098826

  5. NR_164000.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098826

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    132147591..132258033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047444913.1 → XP_047300869.1  putative ankyrin repeat domain-containing protein 30B-like isoform X1

    Related
    ENSP00000295181.6, ENST00000295181.6

RNA

  1. XR_002959312.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    132583202..132693619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054342831.1 → XP_054198806.1  putative ankyrin repeat domain-containing protein 30B-like isoform X1

RNA

  1. XR_008486443.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001024655.1: Suppressed sequence

    Description
    NM_001024655.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7E2S9.3 GenPept UniProtKB/Swiss-Prot:A7E2S9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous