U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

STRCP1 stereocilin pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 554225, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Official Symbol
STRCP1provided by HGNC
Official Full Name
stereocilin pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33915
See related
Ensembl:ENSG00000290691 AllianceGenome:HGNC:33915
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
STRCP
Summary
Predicted to be involved in cell-matrix adhesion. Predicted to be located in extracellular region. Predicted to be active in cell surface; kinocilium; and stereocilium tip. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
15q15.3
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (43699418..43718260, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (41506782..41525624, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (43991616..44010458, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene PPIP5K1P1-CATSPER2 readthrough Neighboring gene diphosphoinositol pentakisphosphate kinase 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:43985876-43986710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:43986711-43987544 Neighboring gene creatine kinase, mitochondrial 1A Neighboring gene RNA, U6 small nuclear 353, pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9320 Neighboring gene RNA, U6 small nuclear 354, pseudogene Neighboring gene CATSPER2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6387

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. CATSPER2, a human autosomal nonsyndromic male infertility gene. Avidan N, et al. Eur J Hum Genet, 2003 Jul. PMID 12825070
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell-matrix adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
is_active_in kinocilium IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in stereocilium tip IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146078.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011330, AC018512
    Related
    ENST00000675830.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    43699418..43718260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    41506782..41525624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_029359.1: Suppressed sequence

    Description
    NG_029359.1: This RefSeq was removed because it is now thought that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NGW2.1 GenPept UniProtKB/Swiss-Prot:A6NGW2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases