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LINC01521 long intergenic non-protein coding RNA 1521 [ Homo sapiens (human) ]

Gene ID: 54944, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01521provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1521provided by HGNC
Primary source
HGNC:HGNC:26029
See related
AllianceGenome:HGNC:26029
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
22q12.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (31346759..31351155)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (31810721..31815117)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (31742745..31747141)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18856 Neighboring gene RNA, 5S ribosomal pseudogene 496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31724965-31725649 Neighboring gene POZ/BTB and AT hook containing zinc finger 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31734465-31734965 Neighboring gene PIK3IP1 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31736003-31736977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31738653-31739190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31739191-31739729 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31739730-31740267 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13630 Neighboring gene RNA, U6 small nuclear 338, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13631 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31795617-31796522 Neighboring gene developmentally regulated GTP binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome annotation-driven approach to cloning the human ORFeome. Collins JE, et al. Genome Biol, 2004. PMID 15461802, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ20464

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120386.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005003, AK000471, BC004550, DA001894

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    31346759..31351155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    31810721..31815117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017834.1: Suppressed sequence

    Description
    NM_017834.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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