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ZSCAN32 zinc finger and SCAN domain containing 32 [ Homo sapiens (human) ]

Gene ID: 54925, updated on 3-Apr-2024

Summary

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Official Symbol
ZSCAN32provided by HGNC
Official Full Name
zinc finger and SCAN domain containing 32provided by HGNC
Primary source
HGNC:HGNC:20812
See related
Ensembl:ENSG00000140987 AllianceGenome:HGNC:20812
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HCCS-5; ZNF434
Summary
Enables identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 4.7), lymph node (RPKM 4.2) and 25 other tissues See more
Orthologs
all
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Genomic context

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Location:
16p13.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (3382085..3401004, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (3409098..3428275, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3432085..3451004, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371059 Neighboring gene MT-ND1 pseudogene 8 Neighboring gene MT-RNR2 like 4 (pseudogene) Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:3450765-3451264 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7133 Neighboring gene zinc finger protein 174 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:3470303-3470585 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3481451-3481952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7134 Neighboring gene zinc finger protein 597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. An empirical framework for binary interactome mapping. Venkatesan K, et al. Nat Methods, 2009 Jan. PMID 19060904, Free PMC Article
  2. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Yang X, et al. Cell, 2016 Feb 11. PMID 26871637, Free PMC Article
  3. Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism. Antoniali G, et al. Nat Commun, 2017 Oct 6. PMID 28986522, Free PMC Article
  4. An atlas of combinatorial transcriptional regulation in mouse and man. Ravasi T, et al. Cell, 2010 Mar 5. PMID 20211142, Free PMC Article
  5. Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. Fragoza R, et al. Nat Commun, 2019 Sep 12. PMID 31515488, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC4179, FLJ20417, FLJ31901, FLJ56278

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 32
Names
human cervical cancer suppressor gene 5 protein
zinc finger protein 434

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001284527.2 → NP_001271456.1  zinc finger and SCAN domain-containing protein 32 isoform a

    See identical proteins and their annotated locations for NP_001271456.1

    Status: VALIDATED

    Source sequence(s)
    AK291213, AY261676
    Consensus CDS
    CCDS66921.1
    UniProtKB/Swiss-Prot
    B4DWL5, C9JB03, Q6WMU8, Q7Z6G2, Q8NFX8, Q9BU74, Q9NX65
    Related
    ENSP00000380061.4, ENST00000396852.9
    Conserved Domains (8) summary
    smart00431
    Location:33 → 142
    SCAN; leucine rich region
    COG5048
    Location:455 → 668
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523 → 543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:522 → 543
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:33 → 121
    SCAN; SCAN domain
    pfam13465
    Location:591 → 616
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:253 → 334
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:218 → 250
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. NM_001284528.2 → NP_001271457.1  zinc finger and SCAN domain-containing protein 32 isoform c

    See identical proteins and their annotated locations for NP_001271457.1

    Status: VALIDATED

    Source sequence(s)
    AK056463, AK291213, AY261676
    Consensus CDS
    CCDS66920.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Related
    ENSP00000483210.1, ENST00000618425.4
    Conserved Domains (5) summary
    COG5048
    Location:230 → 379
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:234 → 254
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:233 → 254
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:302 → 327
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:1 → 45
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  3. NM_001284529.2 → NP_001271458.1  zinc finger and SCAN domain-containing protein 32 isoform c

    See identical proteins and their annotated locations for NP_001271458.1

    Status: VALIDATED

    Source sequence(s)
    AC025283, AK301586, AY261676
    Consensus CDS
    CCDS66920.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Related
    ENSP00000391787.2, ENST00000439568.2
    Conserved Domains (5) summary
    COG5048
    Location:230 → 379
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:234 → 254
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:233 → 254
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:302 → 327
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:1 → 45
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  4. NM_001324340.2 → NP_001311269.1  zinc finger and SCAN domain-containing protein 32 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  5. NM_001324341.2 → NP_001311270.1  zinc finger and SCAN domain-containing protein 32 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  6. NM_001324342.2 → NP_001311271.1  zinc finger and SCAN domain-containing protein 32 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  7. NM_001324343.2 → NP_001311272.1  zinc finger and SCAN domain-containing protein 32 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC025283

  8. NM_001324344.2 → NP_001311273.1  zinc finger and SCAN domain-containing protein 32 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  9. NM_001324345.2 → NP_001311274.1  zinc finger and SCAN domain-containing protein 32 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  10. NM_001324346.2 → NP_001311275.1  zinc finger and SCAN domain-containing protein 32 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC025283
    Conserved Domains (7) summary
    smart00431
    Location:33 → 142
    SCAN; leucine rich region
    COG5048
    Location:382 → 595
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:450 → 470
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:449 → 470
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:33 → 121
    SCAN; SCAN domain
    pfam13465
    Location:518 → 543
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:180 → 261
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  11. NM_017810.4 → NP_060280.2  zinc finger and SCAN domain-containing protein 32 isoform b

    See identical proteins and their annotated locations for NP_060280.2

    Status: VALIDATED

    Source sequence(s)
    AY261676
    Consensus CDS
    CCDS10503.1
    UniProtKB/Swiss-Prot
    Q9NX65
    Related
    ENSP00000302502.3, ENST00000304926.7
    Conserved Domains (6) summary
    COG5048
    Location:307 → 456
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:311 → 331
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:310 → 331
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:379 → 404
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:41 → 122
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:6 → 38
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    3382085..3401004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023371.3 → XP_016878860.1  zinc finger and SCAN domain-containing protein 32 isoform X1

    UniProtKB/Swiss-Prot
    B4DWL5, C9JB03, Q6WMU8, Q7Z6G2, Q8NFX8, Q9BU74, Q9NX65
    Conserved Domains (8) summary
    smart00431
    Location:33 → 142
    SCAN; leucine rich region
    COG5048
    Location:455 → 668
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523 → 543
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:522 → 543
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:33 → 121
    SCAN; SCAN domain
    pfam13465
    Location:591 → 616
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:253 → 334
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    cl02581
    Location:218 → 250
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_047434275.1 → XP_047290231.1  zinc finger and SCAN domain-containing protein 32 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    3409098..3428275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054380581.1 → XP_054236556.1  zinc finger and SCAN domain-containing protein 32 isoform X2

  2. XM_054380578.1 → XP_054236553.1  zinc finger and SCAN domain-containing protein 32 isoform X3

  3. XM_054380576.1 → XP_054236551.1  zinc finger and SCAN domain-containing protein 32 isoform X1

    UniProtKB/Swiss-Prot
    B4DWL5, C9JB03, Q6WMU8, Q7Z6G2, Q8NFX8, Q9BU74, Q9NX65

  4. XM_054380579.1 → XP_054236554.1  zinc finger and SCAN domain-containing protein 32 isoform X2

  5. XM_054380577.1 → XP_054236552.1  zinc finger and SCAN domain-containing protein 32 isoform X1

    UniProtKB/Swiss-Prot
    B4DWL5, C9JB03, Q6WMU8, Q7Z6G2, Q8NFX8, Q9BU74, Q9NX65

  6. XM_054380582.1 → XP_054236557.1  zinc finger and SCAN domain-containing protein 32 isoform X4

  7. XM_054380580.1 → XP_054236555.1  zinc finger and SCAN domain-containing protein 32 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NX65.3 GenPept UniProtKB/Swiss-Prot:Q9NX65

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