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Lce3a late cornified envelope 3A [ Mus musculus (house mouse) ]

Gene ID: 545548, updated on 8-Feb-2024

Summary

Official Symbol
Lce3aprovided by MGI
Official Full Name
late cornified envelope 3Aprovided by MGI
Primary source
MGI:MGI:3645650
See related
Ensembl:ENSMUSG00000054325 AllianceGenome:MGI:3645650
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG545548
Summary
Orthologous to several human genes including LCE3B (late cornified envelope 3B); LCE3C (late cornified envelope 3C); and LCE3E (late cornified envelope 3E). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach adult (RPKM 60.7) and lung adult (RPKM 53.9) See more
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Genomic context

Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92832591..92833553, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92925287..92926230, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1L Neighboring gene STARR-seq mESC enhancer starr_08316 Neighboring gene KPRP N-terminal and LCE C-terminal like protein Neighboring gene late cornified envelope 3B Neighboring gene late cornified envelope 3C

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC118457

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039594.2NP_001034683.1  late cornified envelope 3A

    See identical proteins and their annotated locations for NP_001034683.1

    Status: VALIDATED

    Source sequence(s)
    AC132274
    Consensus CDS
    CCDS38519.1
    UniProtKB/TrEMBL
    Q497I5
    Related
    ENSMUSP00000066468.5, ENSMUST00000067318.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92832591..92833553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)