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Lce1j late cornified envelope 1J [ Mus musculus (house mouse) ]

Gene ID: 545547, updated on 8-Feb-2024

Summary

Official Symbol
Lce1jprovided by MGI
Official Full Name
late cornified envelope 1Jprovided by MGI
Primary source
MGI:MGI:3702532
See related
Ensembl:ENSMUSG00000068887 AllianceGenome:MGI:3702532
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sprrl8
Expression
Restricted expression toward stomach adult (RPKM 32.3) See more
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Genomic context

See Lce1j in Genome Data Viewer
Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92696151..92697821, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92788844..92790514, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1H Neighboring gene late cornified envelope 1I Neighboring gene late cornified envelope 1K Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene keratinocyte expressed, proline-rich

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
late cornified envelope 1J
Names
small proline rich-like 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281499.1NP_001268428.1  late cornified envelope 1J

    See identical proteins and their annotated locations for NP_001268428.1

    Status: VALIDATED

    Source sequence(s)
    AC127247, W18229
    Consensus CDS
    CCDS59647.1
    UniProtKB/TrEMBL
    D3YUU5
    Related
    ENSMUSP00000140507.2, ENSMUST00000186525.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92696151..92697821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)