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Tdg-ps thymine DNA glycosylase, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 545124, updated on 11-Apr-2024

Summary

Official Symbol
Tdg-psprovided by MGI
Official Full Name
thymine DNA glycosylase, pseudogeneprovided by MGI
Primary source
MGI:MGI:3645587
See related
Ensembl:ENSMUSG00000047347 AllianceGenome:MGI:3645587
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5806; EG545124
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Genomic context

Location:
15 E1; 15 38.62 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (82400497..82403443)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (82516295..82519242)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 2, subfamily d, polypeptide 32, pseudogene Neighboring gene STARR-seq mESC enhancer starr_39296 Neighboring gene predicted gene, 27825 Neighboring gene predicted gene, 46525 Neighboring gene predicted gene, 46524

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA N-glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
enables G/U mismatch-specific uracil-DNA glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
enables SUMO binding ISO
Inferred from Sequence Orthology
more info
 
enables chloride ion binding ISO
Inferred from Sequence Orthology
more info
 
enables double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables magnesium ion binding ISO
Inferred from Sequence Orthology
more info
 
enables mismatched DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables nucleic acid binding ISO
Inferred from Sequence Orthology
more info
 
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
enables sodium ion binding ISO
Inferred from Sequence Orthology
more info
 
enables uracil DNA N-glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in base-excision repair ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
G/T mismatch-specific thymine DNA glycosylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    82400497..82403443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521630.3XP_006521693.1  G/T mismatch-specific thymine DNA glycosylase-like

    Related
    ENSMUST00000051363.8
    Conserved Domains (2) summary
    TIGR00584
    Location:2340
    mug; mismatch-specific thymine-DNA glycosylate (mug)
    cd10028
    Location:149153
    UDG-F2_TDG_MUG; motif A [structural motif]