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ATAD2B ATPase family AAA domain containing 2B [ Homo sapiens (human) ]

Gene ID: 54454, updated on 11-Apr-2024

Summary

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Official Symbol
ATAD2Bprovided by HGNC
Official Full Name
ATPase family AAA domain containing 2Bprovided by HGNC
Primary source
HGNC:HGNC:29230
See related
Ensembl:ENSG00000119778 MIM:615347; AllianceGenome:HGNC:29230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
The protein encoded by this gene belongs to the AAA ATPase family. This family member includes an N-terminal bromodomain. It has been found to be localized to the nucleus, partly to replication sites, consistent with a chromatin-related function. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jul 2014]
Expression
Ubiquitous expression in lymph node (RPKM 1.9), testis (RPKM 1.9) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
2p24.1-p23.3
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (23677969..23927123, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (23719586..23961815, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (23971534..24149993, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene kelch like family member 29 Neighboring gene uncharacterized LOC105374325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23727033-23727581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23728885-23729385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23739883-23740383 Neighboring gene NANOG hESC enhancer GRCh37_chr2:23742998-23743499 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:23746074-23747273 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23758787-23759662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23768135-23768636 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23777417-23778356 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23776477-23777416 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:23786903-23787264 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:23805267-23805410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23824976-23825531 Neighboring gene uncharacterized LOC102723401 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23891284-23891901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23891902-23892518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23894797-23895296 Neighboring gene MPRA-validated peak3617 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23911725-23912270 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23925627-23926459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15415 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15416 Neighboring gene MPRA-validated peak3620 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15417 Neighboring gene phosphoglycerate mutase 1 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15418 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:24149008-24149926 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:24149927-24150843 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:24163143-24163338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15421 Neighboring gene ribosomal protein S13 pseudogene 4 Neighboring gene UBX domain protein 2A Neighboring gene succinate dehydrogenase complex subunit C pseudogene 3 Neighboring gene RNA, 7SL, cytoplasmic 610, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain. Lloyd JT, et al. J Med Chem, 2020 Nov 12. PMID 33084328, Free PMC Article
  2. Biological function and histone recognition of family IV bromodomain-containing proteins. Lloyd JT, et al. J Cell Physiol, 2018 Mar. PMID 28500727, Free PMC Article
  3. Analysis of the toxicogenomic effects of exposure to persistent organic pollutants (POPs) in Slovakian girls: correlations between gene expression and disease risk. Mitra PS, et al. Environ Int, 2012 Feb. PMID 22208759, Free PMC Article
  4. ATAD2B is a phylogenetically conserved nuclear protein expressed during neuronal differentiation and tumorigenesis. Leachman NT, et al. Dev Growth Differ, 2010 Dec. PMID 21158754
  5. Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components. Alabert C, et al. Nat Cell Biol, 2014 Mar. PMID 24561620, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ATAD2B may play a role in neuronal differentiation and tumor progression.
    Title: ATAD2B is a phylogenetically conserved nuclear protein expressed during neuronal differentiation and tumorigenesis.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA1240, MGC88424

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables lysine-acetylated histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nucleosome disassembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation-coupled chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ATPase family AAA domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029017.3 RefSeqGene

    Range
    5000..183459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001242338.3 → NP_001229267.2  ATPase family AAA domain-containing protein 2B isoform 2

    Status: REVIEWED

    Source sequence(s)
    AB033066, AC066692, AK094821, BC171846, BM974506
    UniProtKB/Swiss-Prot
    Q9ULI0
    Conserved Domains (4) summary
    cd05528
    Location:960 → 1066
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:433 → 574
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:852 → 1081
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:438 → 572
    AAA; ATPase family associated with various cellular activities (AAA)

  2. NM_001354107.2 → NP_001341036.1  ATPase family AAA domain-containing protein 2B isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC009242, AC066692, AC079924, BM974506, KF456640
    Conserved Domains (2) summary
    cd05528
    Location:974 → 1080
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    cl27568
    Location:411 → 683
    TIP49; TIP49 C-terminus

  3. NM_017552.4 → NP_060022.2  ATPase family AAA domain-containing protein 2B isoform 1

    Status: REVIEWED

    Source sequence(s)
    AB033066, AC066692, AK094821, AK125718, BC171846, BM974506
    Consensus CDS
    CCDS46227.1
    UniProtKB/Swiss-Prot
    B9ZVQ5, Q6ZNA6, Q8N9E7, Q9ULI0
    Related
    ENSP00000238789.5, ENST00000238789.10
    Conserved Domains (4) summary
    cd05528
    Location:960 → 1071
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:433 → 574
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:852 → 1086
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:438 → 572
    AAA; ATPase family associated with various cellular activities (AAA)

RNA

  1. NR_125717.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AB033066, AC066692, AK094821, BC171846, BM974506

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    23677969..23927123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047444799.1 → XP_047300755.1  ATPase family AAA domain-containing protein 2B isoform X1

  2. XM_006712030.5 → XP_006712093.1  ATPase family AAA domain-containing protein 2B isoform X6

    Conserved Domains (4) summary
    cd05528
    Location:974 → 1085
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:866 → 1100
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  3. XM_011532920.4 → XP_011531222.1  ATPase family AAA domain-containing protein 2B isoform X4

    Conserved Domains (4) summary
    cd05528
    Location:960 → 1071
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:433 → 574
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:852 → 1086
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:438 → 572
    AAA; ATPase family associated with various cellular activities (AAA)

  4. XM_011532919.4 → XP_011531221.1  ATPase family AAA domain-containing protein 2B isoform X3

    Conserved Domains (4) summary
    cd05528
    Location:974 → 1080
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:866 → 1095
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  5. XM_011532918.4 → XP_011531220.1  ATPase family AAA domain-containing protein 2B isoform X2

    Conserved Domains (4) summary
    cd05528
    Location:974 → 1085
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:866 → 1100
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  6. XM_005264372.5 → XP_005264429.2  ATPase family AAA domain-containing protein 2B isoform X5

    Conserved Domains (4) summary
    cd05528
    Location:974 → 1085
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    COG5076
    Location:866 → 1100
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  7. XM_011532924.4 → XP_011531226.1  ATPase family AAA domain-containing protein 2B isoform X7

    Conserved Domains (3) summary
    cd05528
    Location:974 → 1059
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  8. XM_011532925.4 → XP_011531227.1  ATPase family AAA domain-containing protein 2B isoform X8

    Conserved Domains (3) summary
    cd05528
    Location:974 → 1059
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  9. XM_047444801.1 → XP_047300757.1  ATPase family AAA domain-containing protein 2B isoform X11

  10. XM_047444800.1 → XP_047300756.1  ATPase family AAA domain-containing protein 2B isoform X10

  11. XM_006712031.5 → XP_006712094.1  ATPase family AAA domain-containing protein 2B isoform X9

    Conserved Domains (3) summary
    cd05528
    Location:974 → 1058
    Bromo_AAA; Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this ...
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  12. XM_047444803.1 → XP_047300759.1  ATPase family AAA domain-containing protein 2B isoform X13

  13. XM_047444802.1 → XP_047300758.1  ATPase family AAA domain-containing protein 2B isoform X12

  14. XM_011532928.3 → XP_011531230.1  ATPase family AAA domain-containing protein 2B isoform X14

    See identical proteins and their annotated locations for XP_011531230.1

    Conserved Domains (2) summary
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  15. XM_011532929.4 → XP_011531231.1  ATPase family AAA domain-containing protein 2B isoform X15

    Conserved Domains (2) summary
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  16. XM_011532931.4 → XP_011531233.1  ATPase family AAA domain-containing protein 2B isoform X17

    Conserved Domains (2) summary
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  17. XM_047444804.1 → XP_047300760.1  ATPase family AAA domain-containing protein 2B isoform X14

  18. XM_047444805.1 → XP_047300761.1  ATPase family AAA domain-containing protein 2B isoform X18

  19. XM_011532930.4 → XP_011531232.1  ATPase family AAA domain-containing protein 2B isoform X16

    Conserved Domains (2) summary
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  20. XM_047444806.1 → XP_047300762.1  ATPase family AAA domain-containing protein 2B isoform X20

  21. XM_011532932.3 → XP_011531234.1  ATPase family AAA domain-containing protein 2B isoform X19

    See identical proteins and their annotated locations for XP_011531234.1

    Conserved Domains (2) summary
    smart00382
    Location:447 → 588
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:452 → 586
    AAA; ATPase family associated with various cellular activities (AAA)

  22. XM_047444808.1 → XP_047300764.1  ATPase family AAA domain-containing protein 2B isoform X22

  23. XM_047444807.1 → XP_047300763.1  ATPase family AAA domain-containing protein 2B isoform X21

RNA

  1. XR_001738780.3 RNA Sequence

  2. XR_001738782.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    23719586..23961815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054342610.1 → XP_054198585.1  ATPase family AAA domain-containing protein 2B isoform X1

  2. XM_054342616.1 → XP_054198591.1  ATPase family AAA domain-containing protein 2B isoform X23

  3. XM_054342611.1 → XP_054198586.1  ATPase family AAA domain-containing protein 2B isoform X1

  4. XM_054342614.1 → XP_054198589.1  ATPase family AAA domain-containing protein 2B isoform X4

  5. XM_054342613.1 → XP_054198588.1  ATPase family AAA domain-containing protein 2B isoform X3

  6. XM_054342612.1 → XP_054198587.1  ATPase family AAA domain-containing protein 2B isoform X2

  7. XM_054342615.1 → XP_054198590.1  ATPase family AAA domain-containing protein 2B isoform X5

  8. XM_054342617.1 → XP_054198592.1  ATPase family AAA domain-containing protein 2B isoform X7

  9. XM_054342618.1 → XP_054198593.1  ATPase family AAA domain-containing protein 2B isoform X8

  10. XM_054342621.1 → XP_054198596.1  ATPase family AAA domain-containing protein 2B isoform X11

  11. XM_054342620.1 → XP_054198595.1  ATPase family AAA domain-containing protein 2B isoform X10

  12. XM_054342619.1 → XP_054198594.1  ATPase family AAA domain-containing protein 2B isoform X9

  13. XM_054342623.1 → XP_054198598.1  ATPase family AAA domain-containing protein 2B isoform X13

  14. XM_054342622.1 → XP_054198597.1  ATPase family AAA domain-containing protein 2B isoform X12

  15. XM_054342624.1 → XP_054198599.1  ATPase family AAA domain-containing protein 2B isoform X14

  16. XM_054342626.1 → XP_054198601.1  ATPase family AAA domain-containing protein 2B isoform X15

  17. XM_054342628.1 → XP_054198603.1  ATPase family AAA domain-containing protein 2B isoform X17

  18. XM_054342625.1 → XP_054198600.1  ATPase family AAA domain-containing protein 2B isoform X14

  19. XM_054342627.1 → XP_054198602.1  ATPase family AAA domain-containing protein 2B isoform X16

  20. XM_054342629.1 → XP_054198604.1  ATPase family AAA domain-containing protein 2B isoform X18

  21. XM_054342631.1 → XP_054198606.1  ATPase family AAA domain-containing protein 2B isoform X20

  22. XM_054342630.1 → XP_054198605.1  ATPase family AAA domain-containing protein 2B isoform X19

  23. XM_054342633.1 → XP_054198608.1  ATPase family AAA domain-containing protein 2B isoform X22

  24. XM_054342632.1 → XP_054198607.1  ATPase family AAA domain-containing protein 2B isoform X21

RNA

  1. XR_008486420.1 RNA Sequence

  2. XR_008486421.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ULI0.4 GenPept UniProtKB/Swiss-Prot:Q9ULI0

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