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CYP4F29P cytochrome P450 family 4 subfamily F member 29, pseudogene [ Homo sapiens (human) ]

Gene ID: 54055, updated on 10-Oct-2023

Summary

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Official Symbol
CYP4F29Pprovided by HGNC
Official Full Name
cytochrome P450 family 4 subfamily F member 29, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:2647
See related
Ensembl:ENSG00000290541 AllianceGenome:HGNC:2647
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf15; CYP4F3LP; 4F-se4[6:7:8]; CYP4F-se4[6:7:8]
Expression
Biased expression in esophagus (RPKM 8.9), testis (RPKM 2.3) and 7 other tissues See more
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Genomic context

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Location:
21q11.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (13843133..13848364, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (12187440..12192671, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (15215454..15220685, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene calponin 2 pseudogene 7 Neighboring gene zinc finger protein 114 pseudogene 1 Neighboring gene MPRA-validated peak4343 silencer Neighboring gene ankyrin repeat domain 18B pseudogene Neighboring gene sorting nexin 18 pseudogene 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. Reymond A, et al. Genomics, 2001 Nov. PMID 11707072
  2. The DNA sequence of human chromosome 21. Hattori M, et al. Nature, 2000 May 18. PMID 10830953

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • cytochrome P450 pseudogene
  • cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene
  • cytochrome P450, family 4, subfamily F, polypeptide 3-like pseudogene
  • cytochrome P450, subfamily IVF, polypeptide 3-like pseudogene

Clone Names

  • DKFZp686M2227

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026755.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AY040090, CA415229
    Related
    ENST00000428301.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    13843133..13848364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    12187440..12192671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_000927.2: Suppressed sequence

    Description
    NG_000927.2: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases