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Gpatch11 G patch domain containing 11 [ Mus musculus (house mouse) ]

Gene ID: 53951, updated on 3-Apr-2024

Summary

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Official Symbol
Gpatch11provided by MGI
Official Full Name
G patch domain containing 11provided by MGI
Primary source
MGI:MGI:1858435
See related
Ensembl:ENSMUSG00000050668 AllianceGenome:MGI:1858435
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccdc75; 2310002B06Rik
Summary
Predicted to enable nucleic acid binding activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 5.3), CNS E18 (RPKM 5.1) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Gpatch11 in Genome Data Viewer
Location:
17 E3; 17 49.54 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (79142951..79155737)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (78835516..78848308)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2C pseudogene Neighboring gene HEAT repeat containing 5B Neighboring gene STARR-positive B cell enhancer ABC_E773 Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene predicted gene, 26637 Neighboring gene sulfotransferase family, cytosolic, 6B, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of cDNA sequences from mouse testis. Kerr SM, et al. Mamm Genome, 1994 Sep. PMID 8000140
  2. Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Lund J, et al. Genomics, 2000 Feb 1. PMID 10704284
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC106516

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  
is_active_in kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in kinetochore ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
G patch domain-containing protein 11
Names
coiled-coil domain containing 75
coiled-coil domain-containing protein 75

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403213.1 → NP_001390142.1  G patch domain-containing protein 11

    Status: VALIDATED

    Source sequence(s)
    AC151264, AC154274
    UniProtKB/TrEMBL
    A0A0R4J215

  2. NM_181649.7 → NP_857632.4  G patch domain-containing protein 11

    See identical proteins and their annotated locations for NP_857632.4

    Status: VALIDATED

    Source sequence(s)
    AC151264, AC154274
    Consensus CDS
    CCDS28979.1
    UniProtKB/Swiss-Prot
    B9EHQ5, Q05BG4, Q3UFS4, Q569F3
    UniProtKB/TrEMBL
    A0A0R4J215
    Related
    ENSMUSP00000126814.2, ENSMUST00000170759.3
    Conserved Domains (2) summary
    smart00443
    Location:74 → 117
    G_patch; glycine rich nucleic binding domain
    pfam13821
    Location:216 → 263
    DUF4187; Domain of unknown function (DUF4187)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    79142951..79155737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249901.2 → XP_030105761.1  G patch domain-containing protein 11 isoform X2

    UniProtKB/Swiss-Prot
    B9EHQ5, Q05BG4, Q3UFS4, Q569F3
    Conserved Domains (2) summary
    smart00443
    Location:46 → 89
    G_patch; glycine rich nucleic binding domain
    pfam13821
    Location:188 → 235
    DUF4187; Domain of unknown function (DUF4187)

  2. XM_017317577.3 → XP_017173066.1  G patch domain-containing protein 11 isoform X2

    UniProtKB/Swiss-Prot
    B9EHQ5, Q05BG4, Q3UFS4, Q569F3
    Conserved Domains (2) summary
    smart00443
    Location:46 → 89
    G_patch; glycine rich nucleic binding domain
    pfam13821
    Location:188 → 235
    DUF4187; Domain of unknown function (DUF4187)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UFS4.2 GenPept UniProtKB/Swiss-Prot:Q3UFS4

Gene LinkOut

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