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Ccdc97 coiled-coil domain containing 97 [ Mus musculus (house mouse) ]

Gene ID: 52132, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc97provided by MGI
Official Full Name
coiled-coil domain containing 97provided by MGI
Primary source
MGI:MGI:1196455
See related
Ensembl:ENSMUSG00000002608 AllianceGenome:MGI:1196455
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D7Ertd462e; 1200014H14Rik; 2810446P04Rik
Summary
Orthologous to human CCDC97 (coiled-coil domain containing 97). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 35.1), ovary adult (RPKM 33.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 A3; 7 13.99 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (25410537..25418460, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25711112..25719035, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9022 Neighboring gene STARR-positive B cell enhancer ABC_E6524 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26466931-26467040 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26468633-26468786 Neighboring gene B9 protein domain 2 Neighboring gene transforming growth factor, beta 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26503991-26504174 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 1 Neighboring gene STARR-seq mESC enhancer starr_18313 Neighboring gene AXL receptor tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 97

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368381.1 → NP_001355310.1  coiled-coil domain-containing protein 97 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC162614

  2. NM_001368382.1 → NP_001355311.1  coiled-coil domain-containing protein 97 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC162614

  3. NM_001368383.1 → NP_001355312.1  coiled-coil domain-containing protein 97 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC162614

  4. NM_001368384.1 → NP_001355313.1  coiled-coil domain-containing protein 97 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC162614

  5. NM_028771.3 → NP_083047.1  coiled-coil domain-containing protein 97 isoform 1

    See identical proteins and their annotated locations for NP_083047.1

    Status: VALIDATED

    Source sequence(s)
    AC162614
    Consensus CDS
    CCDS20994.1
    UniProtKB/Swiss-Prot
    Q922V3, Q9DBT3
    Related
    ENSMUSP00000002683.3, ENSMUST00000002683.3
    Conserved Domains (1) summary
    pfam09747
    Location:159 → 326
    DUF2052; Coiled-coil domain containing protein (DUF2052)

RNA

  1. NR_160796.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162614

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    25410537..25418460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DBT3.1 GenPept UniProtKB/Swiss-Prot:Q9DBT3

Gene LinkOut

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