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PBX3-DT PBX3 divergent transcript [ Homo sapiens (human) ]

Gene ID: 51145, updated on 10-Oct-2023

Summary

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Official Symbol
PBX3-DTprovided by HGNC
Official Full Name
PBX3 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:24638
See related
AllianceGenome:HGNC:24638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.3), ovary (RPKM 0.2) and 1 other tissue See more
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Genomic context

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See PBX3-DT in Genome Data Viewer
Location:
9q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (125743754..125745929, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (137943705..137945880, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (128506033..128508208, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MAPK associated protein 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29009 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128407768-128408361 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:128411544-128412743 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29013 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:128416201-128417099 Neighboring gene uncharacterized LOC124902358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128458383-128459122 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20278 Neighboring gene Sharpr-MPRA regulatory region 13831 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29014 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20280 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20282 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20283 Neighboring gene VISTA enhancer hs1030 Neighboring gene VISTA enhancer hs818 Neighboring gene VISTA enhancer hs1102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128540192-128540692 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:128541469-128542156 Neighboring gene PBX homeobox 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29015 Neighboring gene uncharacterized LOC124902271 Neighboring gene Sharpr-MPRA regulatory region 15662 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:128640594-128641187 Neighboring gene VISTA enhancer hs1017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20284 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:128713417-128713932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128750389-128751195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128751196-128752001 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128761012-128761512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128761513-128762013 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128786371-128786870 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128792624-128793228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128793229-128793833 Neighboring gene uncharacterized LOC105376273

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122032.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA397744, AA421133

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    125743754..125745929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    137943705..137945880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_016158.1: Suppressed sequence

    Description
    NM_016158.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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