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PBX2P1 PBX homeobox 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 5088, updated on 10-Oct-2023

Summary

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Official Symbol
PBX2P1provided by HGNC
Official Full Name
PBX homeobox 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:8635
See related
AllianceGenome:HGNC:8635
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PBX2; PBXP1
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Genomic context

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Location:
3q24
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (143176062..143179253)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (145923454..145926643)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (142894904..142898095)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:142838171-142838670 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20650 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14793 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14794 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:142839329-142839970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:142840613-142841254 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20651 Neighboring gene uncharacterized LOC105374137 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:142861418-142861941 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20652 Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:142947064-142947564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20653 Neighboring gene solute carrier family 9 member A9 Neighboring gene SLC9A9 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20654 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:143148743-143149263 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:143162319-143163518 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_64869 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 47

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The novel gene G17, located in the human major histocompatibility complex, encodes PBX2, a homeodomain-containing protein. Aguado B, et al. Genomics, 1995 Feb 10. PMID 7759099
  2. Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a notch homolog, human counterpart of mouse mammary tumor gene int-3. Sugaya K, et al. Genomics, 1994 Sep 15. PMID 7835890
  3. PBX2 and PBX3, new homeobox genes with extensive homology to the human proto-oncogene PBX1. Monica K, et al. Mol Cell Biol, 1991 Dec. PMID 1682799, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • pre-B-cell leukemia homeobox 2 pseudogene 1
  • pre-B-cell leukemia transcription factor pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002434.3 

    Range
    101..3292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    143176062..143179253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    145923454..145926643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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