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DPRXP2 divergent-paired related homeobox pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 503643, updated on 16-Jan-2024

Summary

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Official Symbol
DPRXP2provided by HGNC
Official Full Name
divergent-paired related homeobox pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:32168
See related
Ensembl:ENSG00000271304 AllianceGenome:HGNC:32168
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DPRX homeobox gene family. [provided by RefSeq, Jul 2008]
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Genomic context

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Location:
6p21.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (35989490..35990492, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (35809800..35810798, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (35957267..35958269, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17101 Neighboring gene LHFPL tetraspan subfamily member 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:35810876-35811031 Neighboring gene uncharacterized LOC124901311 Neighboring gene SRSF protein kinase 1 Neighboring gene MPRA-validated peak5780 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17103 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35899139-35899789 Neighboring gene solute carrier family 26 member 8 Neighboring gene uncharacterized LOC105375035 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:35960877-35961390 Neighboring gene uncharacterized LOC105375034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:35991863-35992364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:35992365-35992864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24415 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17104 Neighboring gene Sharpr-MPRA regulatory region 2026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17105 Neighboring gene mitogen-activated protein kinase 14 Neighboring gene NUDT5 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004848.3 

    Range
    101..1103
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    35989490..35990492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    35809800..35810798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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