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LINC00929 long intergenic non-protein coding RNA 929 [ Homo sapiens (human) ]

Gene ID: 503519, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00929provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 929provided by HGNC
Primary source
HGNC:HGNC:48615
See related
Ensembl:ENSG00000259150 AllianceGenome:HGNC:48615
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.6) See more
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Genomic context

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Location:
15q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (26115813..26133037)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23856213..23873450)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (26360960..26378184)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2346 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6266 Neighboring gene uncharacterized LOC105370739 Neighboring gene tRNA-Glu (anticodon TTC) 2-2 Neighboring gene Sharpr-MPRA regulatory region 9219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26371289-26371981 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26375077-26375665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26421889-26422390 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26422391-26422890 Neighboring gene NANOG hESC enhancer GRCh37_chr15:26476139-26476674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26481073-26481711 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26485506-26486446 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26488201-26488985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26505515-26506014 Neighboring gene uncharacterized LOC124903568 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26570561-26571281 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:26606040-26606210 Neighboring gene uncharacterized LOC105370740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26655893-26656682 Neighboring gene long intergenic non-protein coding RNA 2248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26707088-26707588

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide meta-analyses of smoking behaviors in African Americans. David SP, et al. Transl Psychiatry, 2012 May 22. PMID 22832964, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038851.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC038777, BX117286
    Related
    ENST00000556159.6

  2. NR_038852.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and includes three alternate exons, compared to variant 1.
    Source sequence(s)
    AI808329, BX117286
    Related
    ENST00000556213.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    26115813..26133037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    23856213..23873450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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