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SLC22A18AS SLC22A18 antisense RNA [ Homo sapiens (human) ]

Gene ID: 5003, updated on 5-Mar-2024

Summary

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Official Symbol
SLC22A18ASprovided by HGNC
Official Full Name
SLC22A18 antisense RNAprovided by HGNC
Primary source
HGNC:HGNC:10965
See related
Ensembl:ENSG00000254827 MIM:603240; AllianceGenome:HGNC:10965
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BWR1B; BWSCR1B; ORCTL2S; SLC22A1LS; p27-BWR1B
Expression
Broad expression in colon (RPKM 2.2), duodenum (RPKM 1.3) and 24 other tissues See more
Orthologs
all
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Genomic context

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See SLC22A18AS in Genome Data Viewer
Location:
11p15.4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (2887344..2903575, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (2976587..2992820, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (2908574..2924805, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene KCNQ1 downstream neighbor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2904223-2904722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2905995-2906830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2906831-2907666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2907667-2908502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2913065-2913864 Neighboring gene cyclin dependent kinase inhibitor 1C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3074 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2924695-2925196 Neighboring gene solute carrier family 22 member 18 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2933345-2934048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2935457-2936158 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2949927-2950535 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2950536-2951145 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2951146-2951754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2954769-2955381 Neighboring gene pleckstrin homology like domain family A member 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:2961339-2961515 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2967017-2967632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:2967633-2968246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2968247-2968862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:2968863-2969476 Neighboring gene nucleosome assembly protein 1 like 4 Neighboring gene NANOG hESC enhancer GRCh37_chr11:2982073-2982579 Neighboring gene small nucleolar RNA, H/ACA box 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Promoter characterization and regulation of expression of an imprinted gene SLC22A18AS. Bajaj V, et al. Gene, 2008 Nov 15. PMID 18721868
  2. Paternal imprinting of the SLC22A1LS gene located in the human chromosome segment 11p15.5. Bajaj V, et al. BMC Genet, 2004 Jun 3. PMID 15175115, Free PMC Article
  3. Divergently transcribed overlapping genes expressed in liver and kidney and located in the 11p15.5 imprinted domain. Cooper PR, et al. Genomics, 1998 Apr 1. PMID 9570947
  4. Transcriptional map of 170-kb region at chromosome 11p15.5: identification and mutational analysis of the BWR1A gene reveals the presence of mutations in tumor samples. Schwienbacher C, et al. Proc Natl Acad Sci U S A, 1998 Mar 31. PMID 9520460, Free PMC Article
  5. Cytoplasmic Metadherin (MTDH) provides survival advantage under conditions of stress by acting as RNA-binding protein. Meng X, et al. J Biol Chem, 2012 Feb 10. PMID 22199357, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SLC22A18/SLC22A18AS genes are a sense-antisense pair located at human chromosome segment 11p15.5. These genes are paternally imprinted.
    Title: Promoter characterization and regulation of expression of an imprinted gene SLC22A18AS.
  2. Using antibodies generated in rabbit, immunoprecipitation and Western blot analyses, translation of a 253-aa ORF at very low levels occurred. The translated protein was mainly localized in the cytoplasm.
    Title: Promoter characterization and regulation of expression of an imprinted gene SLC22A18AS.
  3. Results suggest imprinting of the paternal allele of SLC22A1LS gene in five fetal tissues: brain, liver, placenta, kidneys and lungs.
    Title: Paternal imprinting of the SLC22A1LS gene located in the human chromosome segment 11p15.5.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • Beckwith-Wiedemann region 1B
  • Beckwith-Wiedemann syndrome chromosome region 1, candidate b
  • SLC22A18-AS1
  • beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein
  • organic cation transporter-like 2 antisense
  • organic cation transporter-like protein 2 antisense protein
  • p27-Beckwith-Wiedemann region 1 B
  • solute carrier family 22 (organic cation transporter), member 1-like antisense
  • solute carrier family 22 (organic cation transporter), member 18 antisense
  • solute carrier family 22 member 1-like antisense protein
  • solute carrier family 22 member 18 antisense protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013791
    Related
    ENST00000625099.4

  2. NR_169305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013791

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    2887344..2903575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187585.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    119555..135790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    2976587..2992820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001302862.2: Suppressed sequence

    Description
    NM_001302862.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.

  2. NM_007105.4: Suppressed sequence

    Description
    NM_007105.4: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

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