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SLC25A51P4 SLC25A51 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 494141, updated on 3-Dec-2023

Summary

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Official Symbol
SLC25A51P4provided by HGNC
Official Full Name
SLC25A51 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:54321
See related
Ensembl:ENSG00000290742 AllianceGenome:HGNC:54321
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 7.5) See more
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Genomic context

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Location:
11p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (18209138..18213578)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (18304646..18309087)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (18230685..18235125)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein pseudogene 1 Neighboring gene MAS related GPR family member X13, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:18243023-18243523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3190 Neighboring gene SAA2-SAA4 readthrough Neighboring gene serum amyloid A4, constitutive Neighboring gene Sharpr-MPRA regulatory regions 9378 and 7495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4492 Neighboring gene serum amyloid A2 Neighboring gene RNA, 5S ribosomal pseudogene 333

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • mitochondrial carrier triple repeat 1 pseudogene
  • solute carrier family 25 member 51 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026541.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC090099, BC026082, BC056262, DB462574
    Related
    ENST00000534640.1

  2. NR_026563.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the presence and absence of exons at its 5' and 3' end, compared to variant 1.
    Source sequence(s)
    AC090099, BC026079, BC056262

  3. NR_026564.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate exon at its 3' end, compared to variant 1.
    Source sequence(s)
    AC090099, AK131059, BC026079, BC056262, DB462574
    Related
    ENST00000340135.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    18209138..18213578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    18304646..18309087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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