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NPM1P6 nucleophosmin 1 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 4875, updated on 10-Oct-2023

Summary

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Official Symbol
NPM1P6provided by HGNC
Official Full Name
nucleophosmin 1 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:7926
See related
AllianceGenome:HGNC:7926
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NG6-4; NPMP6
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Genomic context

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Location:
8q12.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (61202335..61203545)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (61626068..61627280)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (62114894..62116104)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 10423 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27433 Neighboring gene hCG1816373-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27435 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27438 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27437 Neighboring gene nuclear autoantigenic sperm protein pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27439 Neighboring gene Sharpr-MPRA regulatory region 12445 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:61925128-61925715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:61925759-61926468 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:61929973-61931172 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19233 Neighboring gene clavesin 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:61964453-61964975 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:61989140-61989380 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:61990570-61991243 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:61989895-61990569 Neighboring gene meiotic recombination hotspot G Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:62033015-62033646 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27444 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19234 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:62075983-62076484 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:62185690-62186311 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:62186312-62186932 Neighboring gene uncharacterized LOC105375870 Neighboring gene NANOG hESC enhancer GRCh37_chr8:62279520-62280036 Neighboring gene NANOG hESC enhancer GRCh37_chr8:62335334-62335851 Neighboring gene Sharpr-MPRA regulatory region 11405 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:62392811-62393004 Neighboring gene aspartate beta-hydroxylase Neighboring gene keratin 8 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of seven processed pseudogenes of nucleophosmin/B23 in the human genome. Liu QR, et al. DNA Cell Biol, 1993 Mar. PMID 8471164

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene 6
  • nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001166.4 

    Range
    101..1311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    61202335..61203545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    61626068..61627280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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