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HDGFP1 heparin binding growth factor pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 474167, updated on 10-Oct-2023

Summary

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Official Symbol
HDGFP1provided by HGNC
Official Full Name
heparin binding growth factor pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:31836
See related
AllianceGenome:HGNC:31836
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HDGFP
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Genomic context

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Location:
Xq26.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (131646640..131648237)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (129970855..129972452)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (130780649..130782246)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905218 Neighboring gene olfactory receptor family 7 subfamily L member 1 pseudogene Neighboring gene olfactory receptor family 2 subfamily AF member 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:130798263-130798901 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29949 Neighboring gene Sharpr-MPRA regulatory region 5272 Neighboring gene firre intergenic repeating RNA element Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:130851242-130851768 Neighboring gene MPRA-validated peak7427 silencer Neighboring gene NANOG hESC enhancer GRCh37_chrX:130854476-130855009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29954 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29956 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29958 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29962 Neighboring gene Sharpr-MPRA regulatory region 13451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29963 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29964 Neighboring gene Sharpr-MPRA regulatory region 4069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937096-130937596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:130937597-130938097 Neighboring gene MAPK regulated corepressor interacting protein 2 pseudogene 1 Neighboring gene PNKD pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • hepatoma derived growth factor pseudogene 1
  • hepatoma-derived growth factor (high-mobility group protein 1-like) pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004722.5 

    Range
    101..1698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    131646640..131648237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    129970855..129972452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases