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GOLGA6EP golgin A6 family member E, pseudogene [ Homo sapiens (human) ]

Gene ID: 441728, updated on 10-Oct-2023

Summary

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Official Symbol
GOLGA6EPprovided by HGNC
Official Full Name
golgin A6 family member E, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:55708
See related
AllianceGenome:HGNC:55708
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.8) See more
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Genomic context

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Location:
15q24.2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (75775553..75789720)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (73646075..73660458)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:76043715-76044276 Neighboring gene peptidylprolyl isomerase A pseudogene 47 Neighboring gene uncharacterized LOC101929408 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:76058121-76058620 Neighboring gene microRNA 4313 Neighboring gene RNA, 7SL, cytoplasmic 319, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:76084438-76084938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:76084939-76085439 Neighboring gene dynamin 1 pseudogene 49 Neighboring gene Sharpr-MPRA regulatory region 8353 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6683 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:76135870-76136767 Neighboring gene ubiquitin conjugating enzyme E2 Q2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:76163679-76164628 Neighboring gene RNA, 7SL, cytoplasmic 510, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • golgin-like pseudogene

Clone Names

  • FLJ59077

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    75775553..75789720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932489.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    73646075..73660458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085726.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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