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RPL7AP9 ribosomal protein L7a pseudogene 9 [ Homo sapiens (human) ]

Gene ID: 441642, updated on 10-Oct-2023

Summary

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Official Symbol
RPL7AP9provided by HGNC
Official Full Name
ribosomal protein L7a pseudogene 9provided by HGNC
Primary source
HGNC:HGNC:32398
See related
Ensembl:ENSG00000213272 AllianceGenome:HGNC:32398
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
rpL7a; RPL7AP59; RPL7A_24_1258
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Genomic context

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Location:
12q21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (76599652..76600530)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (76577605..76578483)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (76993432..76994310)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:76741501-76742450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:76742451-76743400 Neighboring gene Bardet-Biedl syndrome 10 Neighboring gene oxysterol binding protein like 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6676 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:76884201-76884702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6677 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:76924776-76925504 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6678 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4671 Neighboring gene uncharacterized LOC105369850 Neighboring gene MPRA-validated peak1843 silencer Neighboring gene MPRA-validated peak1844 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:77001658-77002857 Neighboring gene Sharpr-MPRA regulatory region 7057 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:77027852-77028505 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:77028506-77029158 Neighboring gene uncharacterized LOC105369851 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:77029947-77031146 Neighboring gene YWHAQ pseudogene 7 Neighboring gene ribosomal protein L21 pseudogene 98

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Human L7a ribosomal protein: sequence, structural organization, and expression of a functional gene. De Falco S, et al. Gene, 1993 Apr 30. PMID 8482538
  2. Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production. Chung SA, et al. PLoS Genet, 2011 Mar. PMID 21408207, Free PMC Article
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. Bennett EJ, et al. Cell, 2010 Dec 10. PMID 21145461, Free PMC Article
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • ribosomal protein L7a pseudogene 59

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010228.2 

    Range
    101..979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    76599652..76600530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    76577605..76578483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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