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SUGT1P1 SUGT1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 441394, updated on 10-Oct-2023

Summary

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Official Symbol
SUGT1P1provided by HGNC
Official Full Name
SUGT1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:19384
See related
AllianceGenome:HGNC:19384
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SGT1P; SUGT1P; bA255A11.1
Expression
Biased expression in testis (RPKM 6.1), brain (RPKM 1.2) and 12 other tissues See more
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Genomic context

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Location:
9p13.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (33500756..33511166, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (33519262..33529671, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (33500754..33511164, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28297 Neighboring gene nucleolar protein 6 Neighboring gene uncharacterized LOC107987061 Neighboring gene microRNA 6851 Neighboring gene vomeronasal 1 receptor 47 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28298 Neighboring gene ankyrin repeat domain 18B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28299 Neighboring gene MPRA-validated peak7218 silencer Neighboring gene melanoma antigen pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1
  • bA255A11.10 (putative novel T cell receptor beta chain V region protein)
  • suppressor of G2 allele of SKP1 pseudogene 1

Clone Names

  • MGC15151

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003667.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139008, BE264023, DA804368, DB133316

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    33500756..33511166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    33519262..33529671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001007550.1: Suppressed sequence

    Description
    NM_001007550.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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