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ZC3H11C zinc finger CCCH-type containing 11C [ Homo sapiens (human) ]

Gene ID: 441155, updated on 3-Apr-2024

Summary

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Official Symbol
ZC3H11Cprovided by HGNC
Official Full Name
zinc finger CCCH-type containing 11Cprovided by HGNC
Primary source
HGNC:HGNC:56304
See related
Ensembl:ENSG00000214558
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 13.2), skin (RPKM 9.9) and 25 other tissues See more
Orthologs
all
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Genomic context

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See ZC3H11C in Genome Data Viewer
Location:
6q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (65301476..65306574)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (66455264..66460362)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (66011369..66016467)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene eyes shut homolog Neighboring gene uncharacterized LOC105377837 Neighboring gene NANOG hESC enhancer GRCh37_chr6:65716434-65717013 Neighboring gene uncharacterized LOC107986607 Neighboring gene uncharacterized LOC124901559 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92568 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92593 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92629 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92636 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92651 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92656 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92672 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92766 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_92772 and experimental_92778 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92831 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92928 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:66278733-66279372 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93128 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93152 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93271 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr6:66348122-66348622 and GRCh37_chr6:66348623-66349123 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_93370 and experimental_93383 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93446 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93466 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93494 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93502 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_93582 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:66481227-66481728 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:66481729-66482228 Neighboring gene SLC25A51 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proximity-dependent biotinylation map of a human cell. Go CD, et al. Nature, 2021 Jul. PMID 34079125
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 11C
Names
zinc finger CCCH-type containing 11A-like
zinc finger CCCH-type domain-containing-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271675.2 → NP_001258604.1  zinc finger CCCH domain-containing protein 11C

    See identical proteins and their annotated locations for NP_001258604.1

    Status: VALIDATED

    Source sequence(s)
    AL365217
    Consensus CDS
    CCDS93939.1
    UniProtKB/Swiss-Prot
    P0DQW0
    UniProtKB/TrEMBL
    A0A8V8TLD8, B4DYM8
    Related
    ENSP00000513306.1, ENST00000398578.3
    Conserved Domains (2) summary
    smart00356
    Location:6 → 28
    ZnF_C3H1; zinc finger
    pfam15663
    Location:2 → 110
    zf-CCCH_3; Zinc-finger containing family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    65301476..65306574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010889.3 → XP_016866378.1  zinc finger CCCH domain-containing protein 11C isoform X1

    UniProtKB/Swiss-Prot
    P0DQW0
    UniProtKB/TrEMBL
    A0A8V8TLD8, B4DYM8
    Conserved Domains (2) summary
    smart00356
    Location:6 → 28
    ZnF_C3H1; zinc finger
    pfam15663
    Location:2 → 110
    zf-CCCH_3; Zinc-finger containing family

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    66455264..66460362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054355511.1 → XP_054211486.1  zinc finger CCCH domain-containing protein 11C isoform X1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006000.3: Suppressed sequence

    Description
    NG_006000.3: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DQW0.1 GenPept UniProtKB/Swiss-Prot:P0DQW0

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