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IL6ST-DT IL6ST divergent transcript [ Homo sapiens (human) ]

Gene ID: 441072, updated on 10-Oct-2023

Summary

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Official Symbol
IL6ST-DTprovided by HGNC
Official Full Name
IL6ST divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55804
See related
Ensembl:ENSG00000227908 AllianceGenome:HGNC:55804
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (55995167..56003649)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (56823591..56832073)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (55290995..55299477)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein H1 pseudogene 3 Neighboring gene interleukin 31 receptor A Neighboring gene H3K4me1 hESC enhancers GRCh37_chr5:55198729-55199230 and GRCh37_chr5:55199231-55199730 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:55206646-55207845 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:55218660-55219260 Neighboring gene interleukin 6 cytokine family signal transducer Neighboring gene CRISPRi-FlowFISH-validated IL6ST regulatory element GRCh37_chr5:55289559-55291877 Neighboring gene small nucleolar RNA U13 Neighboring gene Sharpr-MPRA regulatory region 5314 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22560 Neighboring gene uncharacterized LOC105378976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:55369795-55370296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22562 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:55375429-55376193 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:55378657-55379318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22563 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:55385865-55386365 Neighboring gene Sharpr-MPRA regulatory region 6268 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:55418099-55418271 Neighboring gene uncharacterized LOC101928419 Neighboring gene ankyrin repeat domain 55 Neighboring gene RNA, U6 small nuclear 299, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTD-2031P19.3

Clone Names

  • FLJ31104

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_102755.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016596, BC039324
    Related
    ENST00000500093.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    55995167..56003649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    56823591..56832073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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