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CPEB2-DT CPEB2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 441009, updated on 10-Oct-2023

Summary

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Official Symbol
CPEB2-DTprovided by HGNC
Official Full Name
CPEB2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49082
See related
Ensembl:ENSG00000247624 AllianceGenome:HGNC:49082
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DRAIR; CPEB2-AS1
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
4p15.33-p15.32
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (14909961..15002045, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (14889863..14983825, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (14911585..15003669, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 504 Neighboring gene uncharacterized LOC105374496 Neighboring gene MT-ND2 pseudogene 31 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14667012-14667571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21331 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14857565-14858764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21334 Neighboring gene uncharacterized LOC105374498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15294 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:15005985-15006551 Neighboring gene C1QTNF7 antisense RNA 1 Neighboring gene cytoplasmic polyadenylation element binding protein 2 Neighboring gene RN7SK pseudogene 170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. lncRNA DRAIR is downregulated in diabetic monocytes and modulates the inflammatory phenotype via epigenetic mechanisms. Reddy MA, et al. JCI Insight, 2021 Jun 8. PMID 33945509, Free PMC Article
  2. Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations. Hatemi PK, et al. Behav Genet, 2014 May. PMID 24569950, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. lncRNA DRAIR is downregulated in diabetic monocytes and modulates the inflammatory phenotype via epigenetic mechanisms.
    Title: lncRNA DRAIR is downregulated in diabetic monocytes and modulates the inflammatory phenotype via epigenetic mechanisms.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CPEB2 antisense RNA 1 (head to head)
  • Diabetes Regulated anti-inflammatory RNA

Clone Names

  • FLJ35938, AC006296.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038857.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC039114
    Related
    ENST00000500394.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    14909961..15002045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_013171799.1 Reference GRCh38.p14 PATCHES

    Range
    57114..73939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    14889863..14983825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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