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LOC440742 uncharacterized LOC440742 [ Homo sapiens (human) ]

Gene ID: 440742, updated on 28-Oct-2023

Summary

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Gene symbol
LOC440742
Gene description
uncharacterized LOC440742
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q44
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (244063664..244067910)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (243480154..243484399)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2774 Neighboring gene uncharacterized LOC124904570 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2012 Neighboring gene NANOG hESC enhancer GRCh37_chr1:244215360-244215861 Neighboring gene zinc finger and BTB domain containing 18 Neighboring gene Sharpr-MPRA regulatory region 3339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2833 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:244240280-244240780 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:244250689-244250887 Neighboring gene uncharacterized LOC105373261 Neighboring gene RNA, 7SL, cytoplasmic 148, pseudogene Neighboring gene uncharacterized LOC105373260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188391.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590483

  2. NR_188392.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590483

  3. NR_188393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590483

  4. NR_188394.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590483

  5. NR_188395.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590483

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    244063664..244067910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    243480154..243484399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013710.1: Suppressed sequence

    Description
    NM_001013710.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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