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ANKRD20A5P ankyrin repeat domain 20 family member A5, pseudogene [ Homo sapiens (human) ]

Gene ID: 440482, updated on 10-Oct-2023

Summary

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Official Symbol
ANKRD20A5Pprovided by HGNC
Official Full Name
ankyrin repeat domain 20 family member A5, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33833
See related
AllianceGenome:HGNC:33833
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD20A5
Expression
Broad expression in testis (RPKM 3.5), esophagus (RPKM 1.7) and 15 other tissues See more
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Genomic context

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See ANKRD20A5P in Genome Data Viewer
Location:
18p11.21
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (14179097..14227050)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (14341967..14389945)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (14179096..14227049)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6, regulatory subunit 2 pseudogene 1 Neighboring gene neurofibromin 1 pseudogene 5 Neighboring gene RNA, U6 small nuclear 316, pseudogene Neighboring gene ras homolog family member T1 pseudogene 1 Neighboring gene sorting nexin 18 pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 35, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article
  2. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. Suzuki Y, et al. Genome Res, 2004 Sep. PMID 15342556, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • Putative ankyrin repeat domain-containing protein 20A-like protein MGC26718
  • ankyrin repeat domain-containing protein 20A-like protein MGC26718
  • putative ankyrin repeat domain-containing protein 20A5

Clone Names

  • MGC26718

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040113.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001004

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    14179097..14227050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    14341967..14389945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001029999.3: Suppressed sequence

    Description
    NM_001029999.3: This RefSeq was permanently suppressed because the CDS is partial, and currently there is insufficient evidence to predict the full-length nature of the transcript.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0PJZ0.1 GenPept UniProtKB/Swiss-Prot:A0PJZ0

Gene LinkOut

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Chemical Information
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