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BAIAP2-DT BAIAP2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 440465, updated on 10-Oct-2023

Summary

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Official Symbol
BAIAP2-DTprovided by HGNC
Official Full Name
BAIAP2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:44342
See related
Ensembl:ENSG00000226137 AllianceGenome:HGNC:44342
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BAIAP2-AS1; lnc-BAIAP2
Expression
Ubiquitous expression in brain (RPKM 9.6), lung (RPKM 7.0) and 23 other tissues See more
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Genomic context

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Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (81029133..81034719, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81937509..81943095, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (79002933..79008519, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC124904078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12953 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79004316-79004924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79004925-79005532 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79008768-79009763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79010814-79011366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79013023-79013574 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79017015-79017560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79019743-79020287 Neighboring gene BAR/IMD domain containing adaptor protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12954 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79025642-79026450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79026451-79027257 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79029899-79030790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79030791-79031680 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79031681-79032572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79037129-79037736 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79038344-79038950 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79063531-79064032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79066868-79067758 Neighboring gene Sharpr-MPRA regulatory region 8367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79069541-79070430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79070431-79071320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79075501-79076018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79076019-79076535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79085595-79086096 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79086097-79086596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79086611-79087352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79092251-79092794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79092795-79093338 Neighboring gene Sharpr-MPRA regulatory region 11647 Neighboring gene apoptosis associated tyrosine kinase Neighboring gene microRNA 657

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The long noncoding RNA ROCKI regulates inflammatory gene expression. Zhang Q, et al. EMBO J, 2019 Apr 15. PMID 30918008, Free PMC Article
  2. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. Otsuki T, et al. DNA Res, 2005. PMID 16303743
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • BAIAP2 antisense RNA 1 (head to head)
  • BAIAP2 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ14444, FLJ31993, FLJ39290, FLJ42772, FLJ90757, MGC131745

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026857.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127496
    Related
    ENST00000573167.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    81029133..81034719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    81937509..81943095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004336.2: Suppressed sequence

    Description
    NM_001004336.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

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