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LINC00544 long intergenic non-protein coding RNA 544 [ Homo sapiens (human) ]

Gene ID: 440131, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00544provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 544provided by HGNC
Primary source
HGNC:HGNC:43679
See related
AllianceGenome:HGNC:43679
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00544 in Genome Data Viewer
Location:
13q12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (29936531..29950488)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29159146..29173078)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30510668..30524625)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 297 Neighboring gene long intergenic non-protein coding RNA 572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7529 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30537636-30538545 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:30538546-30539454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30591649-30592150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30592151-30592650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619407-30619908 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:30619909-30620408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:30651921-30652424 Neighboring gene long intergenic non-protein coding RNA 365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7530 Neighboring gene long intergenic non-protein coding RNA 384

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA00544 serves as a potential novel predictive and prognostic marker for HR+ HER2- subtype breast cancer. Liu L, et al. Sci Rep, 2017 Sep 28. PMID 28959047, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033889.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI026706, BC132810, BX118434

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    29936531..29950488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    29159146..29173078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001010918.1: Suppressed sequence

    Description
    NM_001010918.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.

  2. NM_001099778.1: Suppressed sequence

    Description
    NM_001099778.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version

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