U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00575 long intergenic non-protein coding RNA 575 [ Homo sapiens (human) ]

Gene ID: 439934, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC00575provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 575provided by HGNC
Primary source
HGNC:HGNC:21342
See related
Ensembl:ENSG00000231782 AllianceGenome:HGNC:21342
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C4orf11
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC00575 in Genome Data Viewer
Location:
4q21.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (82613113..82621437, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (85942331..85950615, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (83534266..83542590, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150C Neighboring gene ribosomal protein S6 pseudogene Neighboring gene Sharpr-MPRA regulatory region 10449 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:83482867-83483366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83506651-83507180 Neighboring gene Sharpr-MPRA regulatory region 8782 Neighboring gene PTPN11 pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83561231-83561730 Neighboring gene stearoyl-CoA desaturase 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83614716-83615216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:83615217-83615717 Neighboring gene uncharacterized LOC124900727 Neighboring gene SLC66A2 pseudogene 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization. Schulz HL, et al. Cytogenet Genome Res, 2004. PMID 15218245

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. One transcript expressed exclusively in retina and retinal pigment epithelium is the novel gene C4orf11 which is comprised of four exons on chromosome 4q21.2
    Title: Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024087.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AY316301
    Related
    ENST00000426551.5

  2. NR_024088.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AY316302
    Related
    ENST00000515811.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    82613113..82621437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    85942331..85950615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033661.1: Suppressed sequence

    Description
    NM_001033661.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6W349.1 GenPept UniProtKB/Swiss-Prot:Q6W349

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous