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Litafd LITAF domain containing [ Mus musculus (house mouse) ]

Gene ID: 436336, updated on 5-Mar-2024

Summary

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Official Symbol
Litafdprovided by MGI
Official Full Name
LITAF domain containingprovided by MGI
Primary source
MGI:MGI:3643507
See related
Ensembl:ENSMUSG00000107252 AllianceGenome:MGI:3643507
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5767; Gm43786; EG436336
Summary
Orthologous to human LITAFD (LITAF domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 70.3) See more
Orthologs
human all
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Genomic context

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Location:
16 A1; 16 4.27 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (8489542..8501769)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (8679919..8683905)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene ferritin light chain 2 pseudogene Neighboring gene transmembrane protein 186 Neighboring gene phosphomannomutase 2 Neighboring gene calcium regulated heat stable protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E8616 Neighboring gene ubiquitin specific peptidase 7 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:8745912-8746157 Neighboring gene STARR-seq mESC enhancer starr_40018 Neighboring gene STARR-seq mESC enhancer starr_40019 Neighboring gene predicted gene, 25805

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of cytokine production IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasmic side of late endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasmic side of lysosomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lITAF domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324517.2 → NP_001311446.2  lITAF domain-containing protein

    Status: VALIDATED

    Source sequence(s)
    AC115005
    UniProtKB/TrEMBL
    A0A0J9YTU8
    Related
    ENSMUSP00000143858.3, ENSMUST00000201722.2
    Conserved Domains (1) summary
    cl02754
    Location:6 → 75
    zf-LITAF-like; LITAF-like zinc ribbon domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    8489542..8501769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249172.2 → XP_030105032.1  lITAF domain-containing protein isoform X2

    Conserved Domains (1) summary
    pfam10601
    Location:63 → 98
    zf-LITAF-like; LITAF-like zinc ribbon domain

  2. XM_030249171.2 → XP_030105031.1  lITAF domain-containing protein isoform X1

    Conserved Domains (1) summary
    pfam10601
    Location:63 → 131
    zf-LITAF-like; LITAF-like zinc ribbon domain

  3. XM_030249173.2 → XP_030105033.1  lITAF domain-containing protein isoform X3

    Conserved Domains (1) summary
    pfam10601
    Location:57 → 92
    zf-LITAF-like; LITAF-like zinc ribbon domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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