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4930533I22Rik RIKEN cDNA 4930533I22 gene [ Mus musculus (house mouse) ]

Gene ID: 434018, updated on 8-Feb-2024

Summary

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Official Symbol
4930533I22Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930533I22 geneprovided by MGI
Primary source
MGI:MGI:3612486
See related
AllianceGenome:MGI:3612486
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 3.0) See more
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Genomic context

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Location:
6 B3; 6 27.82 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (57441058..57476515)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (57464073..57506503)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 20 Neighboring gene vomeronasal 1 receptor, pseudogene 11 Neighboring gene predicted gene, 50628 Neighboring gene protein phosphatase 1K (PP2C domain containing) Neighboring gene STARR-positive B cell enhancer ABC_E342 Neighboring gene STARR-seq mESC enhancer starr_16003 Neighboring gene STARR-positive B cell enhancer ABC_E9666 Neighboring gene hect domain and RLD 6 Neighboring gene ribosomal protein S27 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Potential readthrough

Included gene: Herc6

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC434018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    57441058..57476515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001785264.1 RNA Sequence

  2. XR_377720.2 RNA Sequence

  3. XR_869131.1 RNA Sequence

  4. XR_001785265.1 RNA Sequence

  5. XR_377716.4 RNA Sequence

  6. XR_377718.4 RNA Sequence

  7. XR_377719.4 RNA Sequence

  8. XR_869127.3 RNA Sequence

  9. XR_869130.3 RNA Sequence

  10. XR_869129.3 RNA Sequence

  11. XR_003956445.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001029879.1: Suppressed sequence

    Description
    NM_001029879.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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