U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ociad2 OCIA domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 433904, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Ociad2provided by MGI
Official Full Name
OCIA domain containing 2provided by MGI
Primary source
MGI:MGI:1916377
See related
Ensembl:ENSMUSG00000029153 AllianceGenome:MGI:1916377
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810027I20Rik
Summary
Acts upstream of or within response to bacterium. Located in mitochondrial inner membrane. Orthologous to human OCIAD2 (OCIA domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 17.9), bladder adult (RPKM 14.8) and 16 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
5 C3.3; 5 38.54 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (73479541..73496290, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (73322198..73338947, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13383 Neighboring gene predicted gene, 40316 Neighboring gene STARR-seq mESC enhancer starr_13384 Neighboring gene OCIA domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_13385 Neighboring gene predicted gene, 34496 Neighboring gene STARR-seq mESC enhancer starr_13386 Neighboring gene predicted gene, 34583

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Endocrine lineage biases arise in temporally distinct endocrine progenitors during pancreatic morphogenesis. Scavuzzo MA, et al. Nat Commun, 2018 Aug 22. PMID 30135482, Free PMC Article
  2. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article
  3. Proteomic analysis of the mouse liver mitochondrial inner membrane. Da Cruz S, et al. J Biol Chem, 2003 Oct 17. PMID 12865426
  4. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1) 
  • Endonuclease-mediated (2) 

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC51598

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial inner membrane HDA PubMed 
located_in mitochondrion HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
OCIA domain-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310636.1 → NP_001297565.1  OCIA domain-containing protein 2 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a shorter, distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC108828
    Consensus CDS
    CCDS80301.1
    UniProtKB/TrEMBL
    A0A0J9YU56, A0A0J9YUI7
    Related
    ENSMUSP00000144012.2, ENSMUST00000201908.4
    Conserved Domains (1) summary
    pfam07051
    Location:12 → 88
    OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

  2. NM_026950.4 → NP_081226.1  OCIA domain-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_081226.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC108828, AK007617, CJ146723
    Consensus CDS
    CCDS19340.1
    UniProtKB/Swiss-Prot
    Q9D8W7
    Related
    ENSMUSP00000084445.6, ENSMUST00000087195.9
    Conserved Domains (1) summary
    pfam07051
    Location:33 → 117
    OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    73479541..73496290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D8W7.1 GenPept UniProtKB/Swiss-Prot:Q9D8W7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous