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Spata31f1a spermatogenesis associated 31 subfamily F member 1A [ Mus musculus (house mouse) ]

Gene ID: 433698, updated on 5-Mar-2024

Summary

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Official Symbol
Spata31f1aprovided by MGI
Official Full Name
spermatogenesis associated 31 subfamily F member 1Aprovided by MGI
Primary source
MGI:MGI:3651059
See related
Ensembl:ENSMUSG00000078721 AllianceGenome:MGI:3651059
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12394; Gm12429; Fam205a1
Summary
Orthologous to human FAM205A (family with sequence similarity 205 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 10.3), cortex adult (RPKM 2.7) and 6 other tissues See more
Orthologs
human all
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Genomic context

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Location:
4 A5; 4 22.86 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (42848067..42856138, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (42848067..42859820, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930578G10 gene Neighboring gene C-C motif chemokine ligand 21 (serine) Neighboring gene predicted gene 9615 Neighboring gene STARR-seq mESC enhancer starr_10042 Neighboring gene spermatogenesis associated 31 subfamily F member 3 Neighboring gene PHD finger protein 24 Neighboring gene predicted gene, 52697

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

General protein information

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Preferred Names
Fam205a1 protein; fam205a1 protein
Names
family with sequence similarity 205, member A1
protein FAM205A-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277167.1 → NP_001264096.1  Fam205a1 protein

    Status: VALIDATED

    Source sequence(s)
    AL772334, AV257990, BB572684
    Consensus CDS
    CCDS71367.1
    UniProtKB/TrEMBL
    D3YZF6
    Related
    ENSMUSP00000103613.2, ENSMUST00000107979.2
    Conserved Domains (2) summary
    pfam14650
    Location:416 → 687
    FAM75; FAM75 family
    pfam15371
    Location:55 → 136
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    42848067..42856138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538052.3 → XP_006538115.1  fam205a1 protein isoform X1

    Conserved Domains (3) summary
    pfam14650
    Location:397 → 582
    FAM75; FAM75 family
    pfam15371
    Location:45 → 119
    DUF4599; Domain of unknown function (DUF4599)
    pfam15402
    Location:1075 → 1273
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006042.4: Suppressed sequence

    Description
    NG_006042.4: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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