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Gimd1 GIMAP family P-loop NTPase domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 433653, updated on 5-Mar-2024

Summary

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Official Symbol
Gimd1provided by MGI
Official Full Name
GIMAP family P-loop NTPase domain containing 1provided by MGI
Primary source
MGI:MGI:3647547
See related
Ensembl:ENSMUSG00000091721 AllianceGenome:MGI:3647547
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5549; EG433653
Summary
Predicted to enable GTP binding activity. Orthologous to human GIMD1 (GIMAP family P-loop NTPase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 3.2), small intestine adult (RPKM 2.0) and 5 other tissues See more
Orthologs
human all
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Genomic context

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Location:
3 G3; 3 61.47 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (132335607..132353543)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (132629846..132647782)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene dickkopf WNT signaling pathway inhibitor 2 Neighboring gene STARR-seq mESC enhancer starr_09013 Neighboring gene STARR-seq mESC enhancer starr_09014 Neighboring gene STARR-seq mESC enhancer starr_09015 Neighboring gene predicted gene, 30147 Neighboring gene STARR-seq mESC enhancer starr_09016 Neighboring gene STARR-seq mESC enhancer starr_09017 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:132346690-132347052 Neighboring gene predicted gene 9402 Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 Neighboring gene TBC1 domain containing kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
GTPase IMAP family member GIMD1
Names
GIMAP family P-loop NTPase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270430.2 → NP_001257359.1  GTPase IMAP family member GIMD1

    See identical proteins and their annotated locations for NP_001257359.1

    Status: VALIDATED

    Source sequence(s)
    AC122851
    Consensus CDS
    CCDS57257.1
    UniProtKB/Swiss-Prot
    E9PW74
    Related
    ENSMUSP00000126832.2, ENSMUST00000163241.4
    Conserved Domains (1) summary
    cl38936
    Location:9 → 210
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_001372140.1 → NP_001359069.1  GTPase IMAP family member GIMD1

    Status: VALIDATED

    Source sequence(s)
    AC122851
    Consensus CDS
    CCDS57257.1
    UniProtKB/Swiss-Prot
    E9PW74
    Related
    ENSMUSP00000148832.2, ENSMUST00000212804.2
    Conserved Domains (1) summary
    cl38936
    Location:9 → 210
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001372141.1 → NP_001359070.1  GTPase IMAP family member GIMD1

    Status: VALIDATED

    Source sequence(s)
    AC122851
    UniProtKB/Swiss-Prot
    E9PW74
    Related
    ENSMUSP00000148464.2, ENSMUST00000212594.2
    Conserved Domains (1) summary
    cl38936
    Location:9 → 210
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    132335607..132353543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9PW74.1 GenPept UniProtKB/Swiss-Prot:E9PW74

Gene LinkOut

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