U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm5535 predicted gene 5535 [ Mus musculus (house mouse) ]

Gene ID: 433481, updated on 8-Feb-2024

Summary

Official Symbol
Gm5535provided by MGI
Official Full Name
predicted gene 5535provided by MGI
Primary source
MGI:MGI:3645019
See related
Ensembl:ENSMUSG00000074758 AllianceGenome:MGI:3645019
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG433481
Expression
Biased expression in large intestine adult (RPKM 1.3), cerebellum adult (RPKM 0.3) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Gm5535 in Genome Data Viewer
Location:
2 G1; 2 70.95 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (144015070..144031210, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (144173150..144189290, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene barrier to autointegration factor 2, opposite strand Neighboring gene STARR-positive B cell enhancer ABC_E1601 Neighboring gene predicted gene, 53188 Neighboring gene STARR-seq mESC enhancer starr_05904 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr2:143993097-143993397 Neighboring gene STARR-positive B cell enhancer mm9_chr2:143995491-143995792 Neighboring gene STARR-positive B cell enhancer ABC_E1602 Neighboring gene STARR-seq mESC enhancer starr_05906 Neighboring gene STARR-positive B cell enhancer ABC_E11163 Neighboring gene STARR-positive B cell enhancer ABC_E5993 Neighboring gene STARR-positive B cell enhancer ABC_E9535 Neighboring gene STARR-positive B cell enhancer ABC_E1256 Neighboring gene STARR-positive B cell enhancer ABC_E7865 Neighboring gene STARR-seq mESC enhancer starr_05907 Neighboring gene STARR-positive B cell enhancer ABC_E4507 Neighboring gene sorting nexin 5 Neighboring gene predicted gene, 26165 Neighboring gene small nucleolar RNA, C/D box 17

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136884.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL824710, AL928891
    Related
    ENSMUST00000099292.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    144015070..144031210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)