U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zeb2os zinc finger E-box binding homeobox 2, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 433424, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Zeb2osprovided by MGI
Official Full Name
zinc finger E-box binding homeobox 2, opposite strandprovided by MGI
Primary source
MGI:MGI:3652108
See related
Ensembl:ENSMUSG00000052248 AllianceGenome:MGI:3652108
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm13476; Zeb2nat
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 4.2), frontal lobe adult (RPKM 3.9) and 26 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2 B; 2 27.31 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (45001150..45004099)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (45111138..45114087)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glycosyltransferase-like domain containing 1 Neighboring gene centromere protein C1 pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:44816144-44816341 Neighboring gene STARR-seq mESC enhancer starr_04400 Neighboring gene zinc finger E-box binding homeobox 2 Neighboring gene microRNA 5129 Neighboring gene STARR-seq mESC enhancer starr_04403 Neighboring gene STARR-positive B cell enhancer mm9_chr2:45049987-45050287 Neighboring gene STARR-seq mESC enhancer starr_04405 Neighboring gene STARR-seq mESC enhancer starr_04406 Neighboring gene VISTA enhancer mm1737 Neighboring gene STARR-seq mESC enhancer starr_04408 Neighboring gene viral integration site 1 Neighboring gene STARR-seq mESC enhancer starr_04409 Neighboring gene STARR-seq mESC enhancer starr_04410 Neighboring gene predicted gene 13479 Neighboring gene predicted gene, 30728

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Beltran M, et al. Genes Dev, 2008 Mar 15. PMID 18347095, Free PMC Article
  2. Organization of the mouse Zfhx1b gene encoding the two-handed zinc finger repressor Smad-interacting protein-1. Nelles L, et al. Genomics, 2003 Oct. PMID 13679026
  3. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Other Names

  • Zeb2 natural antisense transcript

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110571.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL935127, BC065800
    Related
    ENSMUST00000130827.2

  2. NR_110572.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL935127

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    45001150..45004099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.