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Hspd1-ps3 heat shock protein 1 (chaperonin), pseudogene 3 [ Mus musculus (house mouse) ]

Gene ID: 432551, updated on 8-Feb-2024

Summary

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Official Symbol
Hspd1-ps3provided by MGI
Official Full Name
heat shock protein 1 (chaperonin), pseudogene 3provided by MGI
Primary source
MGI:MGI:3651246
See related
AllianceGenome:MGI:3651246
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12141; Hspd1-1p
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Genomic context

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Location:
11 A5; 11 24.61 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (41389504..41391738)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (41498677..41500911)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene high mobility group box 1, pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_29236 Neighboring gene STARR-seq mESC enhancer starr_29237 Neighboring gene STARR-seq mESC enhancer starr_29238 Neighboring gene Kruppel-like factor 2 (lung) pseudogene Neighboring gene STARR-seq mESC enhancer starr_29239 Neighboring gene basic transcription factor 3, pseudogene 7 Neighboring gene RIKEN cDNA A230004M16 gene Neighboring gene STARR-seq mESC enhancer starr_29241 Neighboring gene STARR-seq mESC enhancer starr_29242 Neighboring gene STARR-seq mESC enhancer starr_29243 Neighboring gene gamma-aminobutyric acid type A receptor, subunit gamma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
  2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • chaperonin
  • heat shock protein 1 (chaperonin) pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012866.1 

    Range
    101..2335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    41389504..41391738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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