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CELF2-AS1 CELF2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 414196, updated on 10-Oct-2023

Summary

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Official Symbol
CELF2-AS1provided by HGNC
Official Full Name
CELF2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:23515
See related
AllianceGenome:HGNC:23515
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf31
Summary
Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bone marrow (RPKM 6.2), testis (RPKM 1.7) and 6 other tissues See more
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Genomic context

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Location:
10p14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (11316833..11344674, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (11328922..11356759, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (11358796..11386673, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:11113336-11114535 Neighboring gene CELF2 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2994 Neighboring gene Sharpr-MPRA regulatory region 4729 Neighboring gene Sharpr-MPRA regulatory region 12202 Neighboring gene NANOG hESC enhancer GRCh37_chr10:11224724-11225225 Neighboring gene uncharacterized LOC124902375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2999 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3008 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334439-11334940 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334941-11335440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3009 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357313-11357819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357820-11358325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3010 Neighboring gene uncharacterized LOC105376409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3011 Neighboring gene NANOG hESC enhancer GRCh37_chr10:11482790-11483302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11485575-11486237 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11486238-11486901 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3013 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11493719-11494219 Neighboring gene uncharacterized LOC105376411 Neighboring gene USP6 N-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CELF2 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ40494

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126062.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026887

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    11316833..11344674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    11328922..11356759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012713.1: Suppressed sequence

    Description
    NM_001012713.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N7Q2.2 GenPept UniProtKB/Swiss-Prot:Q8N7Q2

Gene LinkOut

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Research Materials
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