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BC048507 cDNA sequence BC048507 [ Mus musculus (house mouse) ]

Gene ID: 408058, updated on 8-Feb-2024

Summary

Official Symbol
BC048507provided by MGI
Official Full Name
cDNA sequence BC048507provided by MGI
Primary source
MGI:MGI:3040680
See related
Ensembl:ENSMUSG00000064063 AllianceGenome:MGI:3040680
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable several functions, including dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and scaffold protein binding activity. Predicted to be involved in cilium assembly and negative regulation of phosphorylation. Predicted to be located in several cellular components, including axon cytoplasm; kinetochore; and microtubule cytoskeleton. Predicted to be part of COP9 signalosome and cytoplasmic dynein complex. Predicted to colocalize with mitochondrion. Orthologous to human DYNLL1 (dynein light chain LC8-type 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
13 B3; 13 34.85 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (68011445..68012042)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67863326..67863923)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930525G20 gene Neighboring gene STARR-seq mESC enhancer starr_34914 Neighboring gene zinc finger protein 273 Neighboring gene KRAB box domain containing 5 Neighboring gene STARR-seq mESC enhancer starr_34916 Neighboring gene predicted gene 7969 Neighboring gene STARR-seq mESC enhancer starr_34918 Neighboring gene up-regulated in Myc liver

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables dynein intermediate chain binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of cytoplasmic dynein complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
dynein light chain LC8-type 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001185.3NP_001001185.1  dynein light chain LC8-type 1-like

    See identical proteins and their annotated locations for NP_001001185.1

    Status: VALIDATED

    Source sequence(s)
    AK133011
    Consensus CDS
    CCDS36718.1
    UniProtKB/TrEMBL
    Q80ZS7
    Related
    ENSMUSP00000077564.6, ENSMUST00000078471.7
    Conserved Domains (1) summary
    cl03131
    Location:189
    Dynein_light; Dynein light chain type 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    68011445..68012042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)