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Ccdc121rt1 coiled-coil domain containing 121, retrogene 1 [ Mus musculus (house mouse) ]

Gene ID: 403180, updated on 8-Feb-2024

Summary

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Official Symbol
Ccdc121rt1provided by MGI
Official Full Name
coiled-coil domain containing 121, retrogene 1provided by MGI
Primary source
MGI:MGI:2685601
See related
Ensembl:ENSMUSG00000050625 AllianceGenome:MGI:2685601
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm755; Ccdc121; 6530421E24Rik
Summary
Orthologous to human CCDC121 (coiled-coil domain containing 121). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
1 H4; 1 84.69 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (181337198..181339016, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (181509633..181511451, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39717 Neighboring gene cornichon family AMPA receptor auxiliary protein 3 Neighboring gene predicted gene 16547 Neighboring gene STARR-seq mESC enhancer starr_03238 Neighboring gene STARR-seq mESC enhancer starr_03239 Neighboring gene STARR-positive B cell enhancer mm9_chr1:183475630-183475931 Neighboring gene predicted gene, 32767 Neighboring gene dynein, axonemal, heavy chain 14 Neighboring gene STARR-seq mESC enhancer starr_03241 Neighboring gene predicted gene, 33612

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of stage-specific markers during differentiation of hair cells from mouse inner ear stem cells or progenitor cells in vitro. Liu Q, et al. Int J Biochem Cell Biol, 2015 Mar. PMID 25582750
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain containing 121rt1
Names
coiled-coil domain containing 121

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207280.3 → NP_997163.2  coiled-coil domain containing 121rt1

    Status: VALIDATED

    Source sequence(s)
    AC113509, AK078370, BQ175152, BY243316
    Consensus CDS
    CCDS48472.1
    UniProtKB/TrEMBL
    E9Q6D3
    Related
    ENSMUSP00000052294.5, ENSMUST00000058825.5
    Conserved Domains (2) summary
    pfam14988
    Location:77 → 282
    DUF4515; Domain of unknown function (DUF4515)
    cl19252
    Location:236 → 271
    MreC; rod shape-determining protein MreC

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    181337198..181339016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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