U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tigd4 tigger transposable element derived 4 [ Mus musculus (house mouse) ]

Gene ID: 403175, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Tigd4provided by MGI
Official Full Name
tigger transposable element derived 4provided by MGI
Primary source
MGI:MGI:2685264
See related
Ensembl:ENSMUSG00000047819 AllianceGenome:MGI:2685264
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm418; C130063O11Rik
Summary
Predicted to enable DNA binding activity. Predicted to be active in nucleus. Is expressed in diaphragm; tongue muscle; and vertebral axis musculature. Orthologous to human TIGD4 (tigger transposable element derived 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Tigd4 in Genome Data Viewer
Location:
3 F1; 3 37.7 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (84500881..84504339)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (84593574..84597032)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor interacting protein 1 Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 35410 Neighboring gene predicted gene, 46836 Neighboring gene STARR-seq mESC enhancer starr_08087 Neighboring gene STARR-seq mESC enhancer starr_08088 Neighboring gene STARR-positive B cell enhancer mm9_chr3:84457727-84458028 Neighboring gene STARR-positive B cell enhancer ABC_E1263 Neighboring gene transmembrane protein 154 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84485598-84485953

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FBXW7 mutations typically found in human cancers are distinct from null alleles and disrupt lung development. Davis H, et al. J Pathol, 2011 Jun. PMID 21503901, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
tigger transposable element-derived protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207278.2 → NP_997161.1  tigger transposable element-derived protein 4

    See identical proteins and their annotated locations for NP_997161.1

    Status: VALIDATED

    Source sequence(s)
    AC102224
    Consensus CDS
    CCDS17439.1
    UniProtKB/Swiss-Prot
    Q8BUZ3
    Related
    ENSMUSP00000052320.4, ENSMUST00000062623.4
    Conserved Domains (3) summary
    pfam03221
    Location:84 → 143
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:16 → 67
    HTH; Helix-turn-helix domains
    cl21549
    Location:211 → 375
    rve; Integrase core domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    84500881..84504339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BUZ3.1 GenPept UniProtKB/Swiss-Prot:Q8BUZ3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous