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YTHDF1P1 YTH domain family member 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 402220, updated on 10-Oct-2023

Summary

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Official Symbol
YTHDF1P1provided by HGNC
Official Full Name
YTH domain family member 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:31681
See related
Ensembl:ENSG00000251389 AllianceGenome:HGNC:31681
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
YTHDF1P
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Genomic context

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Location:
5q15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (97368587..97370619)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (97869619..97871651)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (96704291..96706323)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene LIX1 and RIOK2 antisense RNA 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:96459480-96460679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22830 Neighboring gene limb and CNS expressed 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16202 Neighboring gene RNA, U1 small nuclear 73, pseudogene Neighboring gene RIO kinase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22832 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22831 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:96669582-96669797 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:96724001-96725200 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:96735958-96736798 Neighboring gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:96844479-96845210 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:96855347-96855880 Neighboring gene long intergenic non-protein coding RNA 1340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22834

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • YTH domain family 1 pseudogene
  • YTH domain family, member 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004396.5 

    Range
    101..2133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    97368587..97370619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    97869619..97871651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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